Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 7.8e-117 423.7 200 100.0
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.3e-115 417.9 200 98.5
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.6e-115 417.5 200 98.5
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 4.0e-97 358.2 200 84.0
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 9.0e-97 357.1 200 84.0
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 6.5e-95 350.9 200 81.0
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.4e-95 350.5 200 80.5
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.5e-94 349.0 200 80.5
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 4.2e-94 348.2 200 82.5
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 9.3e-94 347.1 196 82.7
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.1e-93 345.9 198 81.3
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 4.6e-93 344.7 220 75.9
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.8e-92 342.8 198 79.8
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.1e-89 333.6 201 76.6
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.1e-89 333.6 200 75.5
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.4e-89 333.2 203 75.9
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.1e-89 332.0 198 79.3
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 5.3e-89 331.3 198 76.3
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 5.9e-88 327.8 206 72.3
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.3e-87 326.6 194 75.3
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 8.5e-87 323.9 204 74.0
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.1e-86 323.6 202 73.8
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.5e-86 322.4 200 75.0
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 7.2e-86 320.9 200 72.5
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 3.6e-85 318.5 200 71.0
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 4.6e-85 318.2 198 74.2
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 6.1e-85 317.8 198 70.2
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 5.1e-84 314.7 191 75.4
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 5.1e-84 314.7 208 73.6
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 6.7e-84 314.3 201 74.1
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 8.7e-84 313.9 200 73.0
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.5e-83 313.2 208 73.1
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 5.7e-83 311.2 204 69.6
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 1.6e-82 309.7 204 66.7
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.6e-82 309.7 200 69.0
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 2.8e-82 308.9 198 70.7
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.8e-82 308.9 200 69.5
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 8.2e-82 307.4 203 68.5
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.4e-81 306.6 200 70.0
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.8e-81 306.2 201 71.6
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.4e-81 305.8 201 70.1
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 4.1e-81 305.1 202 71.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.1e-81 305.1 201 70.1
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 4.1e-81 305.1 196 68.4
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 4.1e-81 305.1 201 66.7
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.5e-80 303.1 201 69.7
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 4.5e-80 301.6 192 73.4
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 4.5e-80 301.6 205 69.3
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 7.7e-80 300.8 207 69.1
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.7e-80 300.8 192 70.3
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 7.7e-80 300.8 192 70.3
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.0e-79 300.4 200 69.0
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.3e-79 300.1 185 75.1
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 8.5e-79 297.4 191 71.2
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 8.5e-79 297.4 200 68.0
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 8.5e-79 297.4 201 64.7
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.1e-78 297.0 195 66.2
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.2e-78 295.4 201 69.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 4.2e-78 295.0 192 68.8
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 9.4e-78 293.9 200 66.0
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 9.4e-78 293.9 199 67.8
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 9.4e-78 293.9 201 67.2
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.6e-77 293.1 194 67.5
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 2.7e-77 292.4 202 64.9
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 4.6e-77 291.6 196 68.9
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 4.6e-77 291.6 199 68.3
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 6.7e-76 287.7 197 68.0
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 8.8e-76 287.3 196 67.3
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 8.8e-76 287.3 274 54.7
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 8.8e-76 287.3 192 65.1
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 5.7e-75 284.6 201 64.7
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 1.3e-74 283.5 206 60.7
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 2.2e-74 282.7 200 65.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.2e-74 282.7 200 66.0
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 2.8e-74 282.3 201 64.2
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.8e-74 282.3 196 66.3
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 3.7e-74 282.0 190 67.9
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 6.3e-74 281.2 203 64.5
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 8.2e-74 280.8 185 68.6
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.8e-73 279.6 196 66.3
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.1e-73 278.9 202 63.4
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 4.1e-73 278.5 180 69.4
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 1.2e-72 276.9 200 64.0
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.6e-72 275.8 196 65.8
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 4.5e-72 275.0 198 64.1
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 5.9e-72 274.6 204 60.8
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 7.7e-72 274.2 198 64.1
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 7.7e-72 274.2 204 60.8
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.0e-71 273.9 197 63.5
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 1.0e-71 273.9 192 66.1
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 2.9e-71 272.3 198 63.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 8.5e-71 270.8 196 63.3
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.5e-70 269.2 202 59.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 3.2e-70 268.9 203 61.6
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 3.2e-70 268.9 203 61.6
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 4.2e-70 268.5 188 66.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 7.2e-70 267.7 187 66.3
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 9.4e-70 267.3 198 61.6
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.1e-69 266.2 204 59.8
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 3.6e-69 265.4 207 59.4
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 3.9e-68 261.9 189 65.1
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 5.2e-68 261.5 193 61.7
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 4.4e-67 258.5 273 50.5
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.7e-66 256.5 182 64.8
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.7e-66 256.5 204 59.3
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 6.3e-66 254.6 182 64.8
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 6.3e-66 254.6 182 64.8
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.0e-63 247.3 164 73.8
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.3e-63 246.9 147 74.1
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 3.8e-63 245.4 210 58.1
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.5e-62 243.4 179 62.0
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.2e-62 242.3 200 58.5
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 9.4e-62 240.7 194 55.2
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 4.7e-61 238.4 201 56.7
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.7e-61 238.4 173 62.4
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 6.1e-61 238.0 199 58.8
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.3e-58 230.3 158 67.7
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.7e-58 229.9 200 55.0
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.7e-58 228.8 183 60.1
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.6e-56 223.4 200 53.5
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.0e-56 223.0 195 55.9
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.7e-56 221.1 291 41.9
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.9e-55 219.2 217 51.2
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 5.5e-54 214.9 189 53.4
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 2.1e-53 213.0 131 67.2
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.0e-52 210.7 192 54.7
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 2.0e-51 206.5 194 47.4
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 9.8e-51 204.1 168 58.9
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 1.3e-50 203.8 139 66.2
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.7e-50 203.4 141 69.5
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 3.7e-50 202.2 189 56.1
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.1e-49 200.7 154 60.4
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 3.1e-49 199.1 178 53.9
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 9.1e-49 197.6 191 51.3
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 3.5e-48 195.7 199 48.2
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.0e-47 194.1 186 52.2
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.0e-47 191.8 197 49.2
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 4.2e-46 188.7 134 67.2
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 6.1e-45 184.9 154 57.8
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 6.1e-45 184.9 160 55.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 5.2e-44 181.8 200 43.0
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 4.4e-43 178.7 108 68.5
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 2.8e-42 176.0 134 61.9
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 3.7e-42 175.6 193 44.6
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 8.3e-42 174.5 182 45.6
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.1e-41 174.1 203 43.8
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.5e-40 169.1 203 43.8
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.6e-37 160.2 192 47.4
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.6e-37 160.2 192 47.4
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 1.6e-37 160.2 149 55.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 4.4e-35 152.1 192 44.8
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 1.1e-28 131.0 186 40.3
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.3e-23 113.2 87 58.6
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.6e-21 105.9 86 55.8
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.6e-16 90.5 68 64.7
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 2.1e-16 90.1 149 37.6
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 8.9e-12 74.7 158 31.6
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.7e-10 70.5 49 53.1
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 1.9e-09 67.0 157 27.4
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 9.2e-09 64.7 38 73.7
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 7.8e-08 61.6 56 55.4
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.3e-07 60.8 92 34.8


User provided reference genes

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