Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.5e-130 466.8 236 100.0
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 9.5e-130 466.8 236 100.0
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.1e-128 461.8 236 99.2
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.6e-105 386.3 238 80.3
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.2e-103 380.2 238 79.0
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 8.4e-102 374.0 238 81.1
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 2.1e-97 359.4 240 78.8
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 9.0e-96 354.0 238 77.7
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 5.5e-93 344.7 211 78.7
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 5.5e-93 344.7 234 73.9
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 5.7e-90 334.7 236 74.2
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.3e-89 333.6 228 75.4
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 6.2e-89 331.3 236 74.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 6.2e-89 331.3 241 69.7
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 2.4e-88 329.3 238 69.7
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 5.3e-88 328.2 241 68.9
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 9.0e-88 327.4 232 69.8
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 3.4e-87 325.5 237 70.0
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.0e-86 323.9 246 68.3
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.7e-86 323.2 236 70.3
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.4e-85 320.1 241 68.9
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 4.2e-85 318.5 215 75.3
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 7.1e-85 317.8 222 73.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 9.3e-85 317.4 220 73.2
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 3.5e-84 315.5 220 70.5
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 4.6e-84 315.1 215 74.0
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.0e-83 313.9 236 69.1
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 1.5e-82 310.1 224 70.1
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 2.5e-82 309.3 243 65.8
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.2e-81 306.2 236 68.2
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 2.2e-81 306.2 233 67.8
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 3.7e-81 305.4 241 68.0
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 6.3e-81 304.7 235 66.8
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 8.2e-81 304.3 228 68.4
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 8.2e-81 304.3 213 70.9
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.4e-80 302.8 239 69.0
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 3.1e-80 302.4 243 65.0
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 3.1e-80 302.4 235 65.5
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 3.1e-80 302.4 232 67.2
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 3.1e-80 302.4 243 65.8
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 4.1e-80 302.0 229 68.1
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 2.6e-79 299.3 229 69.0
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.4e-79 298.9 229 69.4
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 4.5e-79 298.5 243 65.0
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 5.9e-79 298.1 242 65.3
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 7.7e-79 297.7 233 65.7
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.0e-78 297.4 243 64.6
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.0e-78 297.4 233 68.2
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 1.0e-78 297.4 234 67.9
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.7e-78 296.6 233 66.5
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 5.0e-78 295.0 241 64.7
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 5.0e-78 295.0 233 67.8
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 6.5e-78 294.7 221 68.3
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 8.5e-78 294.3 229 67.2
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.1e-77 293.9 202 74.8
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 1.1e-77 293.9 221 68.3
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.1e-77 293.9 237 64.1
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.9e-77 293.1 230 66.5
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.2e-77 292.4 236 64.8
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.2e-77 292.4 233 66.5
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 3.2e-77 292.4 233 65.7
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.2e-76 290.4 241 63.5
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.1e-76 289.7 218 68.3
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 3.6e-76 288.9 243 66.7
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 4.6e-76 288.5 238 63.4
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.4e-75 287.0 241 63.1
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.8e-75 286.6 212 67.9
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 2.3e-75 286.2 239 64.4
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 6.7e-75 284.6 234 62.8
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 8.8e-75 284.3 192 72.4
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 8.8e-75 284.3 238 60.5
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.5e-74 283.5 230 65.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 2.5e-74 282.7 224 67.4
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.5e-74 282.7 232 62.5
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 5.7e-74 281.6 233 64.4
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 5.7e-74 281.6 254 61.0
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 9.7e-74 280.8 230 61.3
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.1e-72 277.3 227 63.0
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.4e-72 276.9 288 53.5
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.3e-72 275.0 233 62.7
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 6.9e-72 274.6 224 63.8
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 9.1e-72 274.2 243 63.0
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.2e-71 273.9 216 64.4
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.6e-71 272.7 215 65.1
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.3e-70 270.4 342 47.7
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 2.9e-70 269.2 232 64.2
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 3.8e-70 268.9 225 62.7
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 8.5e-70 267.7 242 59.9
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 2.5e-69 266.2 217 62.7
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 3.2e-69 265.8 246 61.8
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 5.5e-69 265.0 218 62.4
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 2.7e-68 262.7 234 62.0
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.4e-67 260.4 215 63.3
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.8e-67 260.0 225 63.6
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.3e-67 259.6 215 62.8
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.9e-67 258.8 215 62.8
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 6.7e-67 258.1 226 63.3
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 2.0e-66 256.5 237 57.4
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 2.6e-66 256.1 220 63.6
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 4.4e-66 255.4 229 60.7
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-66 255.4 227 60.4
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.7e-65 253.4 218 61.5
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.2e-65 253.1 217 59.9
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.8e-65 251.9 250 57.2
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 7.0e-64 248.1 236 60.6
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 7.0e-64 248.1 228 61.4
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 2.6e-63 246.1 169 76.3
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.6e-63 246.1 226 60.2
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 3.5e-63 245.7 202 63.9
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 4.5e-63 245.4 207 63.3
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 5.9e-63 245.0 167 74.9
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.7e-62 243.4 170 72.9
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 1.7e-62 243.4 190 66.8
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 8.5e-62 241.1 226 57.1
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 3.2e-61 239.2 227 55.9
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 4.2e-61 238.8 214 60.3
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 6.1e-60 235.0 193 64.8
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.5e-58 230.3 231 57.1
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 2.6e-58 229.6 210 55.7
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 5.0e-54 215.3 136 80.1
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 5.5e-53 211.8 238 52.1
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 7.2e-53 211.5 147 71.4
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.6e-52 210.3 187 59.9
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 2.1e-52 209.9 128 78.9
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 2.1e-52 209.9 187 59.9
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 2.1e-52 209.9 187 59.9
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.6e-52 209.1 175 62.3
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.1e-48 196.1 196 57.7
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 4.1e-48 195.7 190 53.2
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 3.5e-47 192.6 228 50.9
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 7.2e-45 184.9 371 36.7
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.6e-44 183.7 176 58.5
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 5.2e-43 178.7 165 53.9
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.2e-39 167.5 179 53.1
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.6e-39 167.2 214 47.7
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 4.3e-37 159.1 288 39.9
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 2.0e-23 113.6 119 52.9
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 7.8e-23 111.7 267 34.5
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 3.6e-20 102.8 81 61.7
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.4e-18 95.9 92 59.8
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 2.2e-17 93.6 101 57.4
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.1e-16 91.3 231 31.6
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.9e-16 90.5 246 29.3
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 2.4e-16 90.1 63 68.3
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.2e-15 87.8 176 38.6
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.2e-15 87.8 75 65.3
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.9e-14 82.8 57 66.7
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 7.3e-13 78.6 164 36.6
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 9.5e-13 78.2 218 33.5
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 4.7e-12 75.9 55 67.3
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.8e-11 73.9 44 81.8
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.0e-10 70.5 44 77.3
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 3.7e-09 66.2 95 45.3
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 8.4e-09 65.1 98 38.8
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 3.0e-06 56.6 65 43.1
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 3.9e-06 56.2 64 45.3
SMO364G0859 Selaginella moellendorffii HOM05D000175 ORTHO05D000481 5.1e-06 55.8 64 43.8
TWI53G1318 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 5.1e-06 55.8 64 45.3
arahy.Tifrunner.gnm1.ann1.P0ZPTX Arachis hypogaea HOM05D005011 ORTHO05D006443 6.6e-06 55.5 65 43.1
CSS0006107 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 6.6e-06 55.5 96 40.6
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 6.6e-06 55.5 62 43.5
Ca_08838_v3 Cicer arietinum L. HOM05D005011 ORTHO05D006443 8.6e-06 55.1 65 43.1
Cc06_g03820 Coffea canephora HOM05D005011 ORTHO05D006443 8.6e-06 55.1 64 45.3
MCO08G161 Micromonas commoda HOM05D000175 ORTHO05D000481 8.6e-06 55.1 61 47.5
Zm00001eb118880 Zea mays HOM05D000175 ORTHO05D000481 8.6e-06 55.1 62 41.9


User provided reference genes

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