Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 0.0e+00 1639.4 831 100.0
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 0.0e+00 1626.7 836 99.0
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 0.0e+00 1468.8 832 91.1
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 3.8e-290 1001.5 878 64.9
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 3.6e-272 941.8 873 63.5
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 8.8e-247 857.4 907 56.6
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.2e-139 501.5 853 43.4
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 3.6e-139 500.0 851 43.4
Gohir.A03G078400 Gossypium hirsutum HOM05D005945 ORTHO05D006749 8.9e-98 362.5 670 41.0
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 1.0e-93 349.0 897 34.1
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 5.1e-93 346.7 873 34.8
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 2.4e-90 337.8 941 33.2
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 6.8e-90 336.3 889 33.1
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 2.2e-88 331.3 988 31.8
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 2.9e-88 330.9 883 32.6
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 3.8e-88 330.5 883 32.6
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 6.4e-88 329.7 1005 31.6
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.9e-87 328.2 835 34.5
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.7e-86 324.3 875 32.1
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 9.3e-79 299.3 857 32.6
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 1.7e-77 295.0 845 32.5
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 1.1e-76 292.4 981 30.9
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 7.3e-76 289.7 928 29.8
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.4e-74 285.4 854 32.0
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 2.4e-74 284.6 844 32.6
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.0e-74 283.9 892 30.9
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.2e-72 278.1 854 31.6
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 6.4e-72 276.6 849 30.6
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.6e-70 271.9 839 31.2
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 6.7e-69 266.5 874 31.9
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 4.3e-68 263.8 897 31.8
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 5.6e-68 263.5 1108 27.7
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 2.4e-66 258.1 794 30.7
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 3.8e-64 250.8 861 31.7
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 3.2e-63 247.7 823 30.4
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 3.9e-61 240.7 842 29.2
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 5.6e-60 236.9 882 29.9
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 2.8e-59 234.6 855 30.3
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 2.8e-59 234.6 262 52.7
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 8.2e-59 233.0 859 29.9
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.4e-58 231.5 876 29.8
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 3.1e-58 231.1 853 30.4
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 6.9e-58 229.9 871 29.4
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 1.5e-57 228.8 857 30.7
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 5.8e-57 226.9 845 28.6
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 5.8e-57 226.9 873 30.0
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 1.0e-56 226.1 881 28.9
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.3e-56 225.7 1012 28.0
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 6.5e-56 223.4 832 27.8
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 1.4e-55 222.2 819 30.3
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.4e-55 222.2 938 29.5
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 1.9e-55 221.9 892 28.9
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 1.9e-55 221.9 892 28.9
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 4.2e-55 220.7 831 28.8
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 5.5e-55 220.3 885 28.2
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 7.1e-55 219.9 901 30.9
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 1.2e-54 219.2 849 29.3
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 1.3e-53 215.7 877 28.2
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 2.3e-53 214.9 876 29.7
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 3.0e-53 214.5 827 29.4
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 3.9e-53 214.2 225 53.8
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 2.5e-52 211.5 890 27.1
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 2.5e-52 211.5 890 27.1
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 2.5e-52 211.5 879 28.7
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 3.3e-52 211.1 844 28.3
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 5.7e-52 210.3 844 29.9
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 9.7e-52 209.5 850 28.9
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 1.6e-51 208.8 854 29.0
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 6.3e-51 206.8 864 29.5
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 6.3e-51 206.8 768 31.8
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 1.4e-50 205.7 824 28.5
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 1.8e-50 205.3 862 28.8
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 1.2e-49 202.6 835 28.4
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 3.4e-49 201.1 876 28.0
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 3.4e-49 201.1 905 27.0
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 4.5e-49 200.7 883 28.8
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 1.7e-48 198.7 767 31.3
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 6.5e-48 196.8 849 27.0
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 1.4e-47 195.7 877 27.7
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 9.4e-47 193.0 881 28.3
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 9.4e-47 193.0 830 27.6
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 1.2e-46 192.6 223 49.8
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 2.7e-46 191.4 272 46.3
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.4e-45 189.1 181 58.0
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 3.9e-45 187.6 839 28.1
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 5.7e-44 183.7 1063 25.8
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 7.4e-44 183.3 928 28.0
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 3.1e-42 177.9 331 36.3
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 5.3e-42 177.2 291 40.5
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.3e-40 172.6 311 43.1
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 2.2e-40 171.8 921 26.6
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 2.9e-40 171.4 903 26.5
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 1.4e-39 169.1 840 27.3
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 1.9e-39 168.7 382 36.6
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.5e-39 168.3 797 27.0
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 2.5e-39 168.3 848 28.2
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.7e-38 164.9 974 25.3
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 4.7e-38 164.1 396 36.9
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.8e-37 162.2 843 27.8
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 8.8e-37 159.8 417 34.3
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 1.1e-36 159.5 449 32.5
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 5.7e-36 157.1 897 26.0
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.8e-35 154.1 185 53.5
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 9.4e-31 139.8 301 36.9
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 2.7e-30 138.3 341 34.6
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.3e-29 135.2 239 40.2
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 1.1e-28 132.9 298 37.2
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 3.3e-28 131.3 206 43.2
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 5.7e-28 130.6 174 44.3
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 1.8e-26 125.6 242 36.4
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 5.9e-25 120.6 872 25.1
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 5.9e-25 120.6 923 24.5
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 7.7e-25 120.2 235 36.2
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.9e-24 118.2 137 46.7
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.9e-23 115.5 668 25.9
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.7e-16 92.4 890 23.3
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.1e-15 89.7 202 35.6
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.2e-09 69.7 128 36.7
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 1.2e-09 69.7 91 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 4.5e-09 67.8 152 32.2
Potri.002G262601 Populus trichocarpa HOM05D005945 ORTHO05D006749 1.1e-07 63.2 107 42.1
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 9.5e-07 60.1 173 28.3
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 1.6e-06 59.3 235 28.5
Lalb_Chr19g0125061 Lupinus albus HOM05D005945 ORTHO05D006749 2.1e-06 58.9 240 26.7
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 3.6e-06 58.2 155 30.3


User provided reference genes

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