Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G444900 Gossypium raimondii HOM05D000701 ORTHO05D000531 6.6e-31 136.7 69 100.0
Gohir.D05G377200 Gossypium hirsutum HOM05D000701 ORTHO05D000531 6.4e-18 93.6 60 78.3
Gohir.D05G377066 Gossypium hirsutum HOM05D000701 ORTHO05D000531 1.9e-17 92.0 62 74.2
Gohir.D05G377300 Gossypium hirsutum HOM05D000701 ORTHO05D000531 1.9e-17 92.0 62 75.8
Gorai.009G444800 Gossypium raimondii HOM05D000701 ORTHO05D000531 1.9e-17 92.0 62 74.2
Gorai.009G445100 Gossypium raimondii HOM05D000701 ORTHO05D000531 1.9e-17 92.0 62 75.8
Gohir.A04G010900 Gossypium hirsutum HOM05D000701 ORTHO05D000531 2.4e-17 91.7 62 75.8
Gohir.D05G377132 Gossypium hirsutum HOM05D000701 ORTHO05D000531 7.1e-17 90.1 62 74.2
Gorai.009G445000 Gossypium raimondii HOM05D000701 ORTHO05D000531 7.1e-17 90.1 62 74.2
Gohir.A04G010700 Gossypium hirsutum HOM05D000701 ORTHO05D000531 2.7e-16 88.2 62 72.6
Cfa020261 Carpinus fangiana HOM05D000701 ORTHO05D000531 1.2e-11 72.8 61 55.7
Cfa020262 Carpinus fangiana HOM05D000701 ORTHO05D000531 1.2e-11 72.8 61 57.4
Duzib213G0556 Durio zibethinus HOM05D000701 ORTHO05D000531 3.4e-11 71.2 59 62.7
FvH4_1g25220 Fragaria vesca HOM05D000701 ORTHO05D000531 3.4e-11 71.2 61 59.0
FAN19G2138 Fragaria x ananassa HOM05D000701 ORTHO05D000531 3.4e-11 71.2 61 59.0
RcHm_v2.0_Chr2g0123131 Rosa chinensis HOM05D000701 ORTHO05D000531 3.4e-11 71.2 61 59.0
QL08p008124 Quercus lobata HOM05D000701 ORTHO05D000531 5.8e-11 70.5 61 60.7
MD03G1191200 Malus domestica HOM05D000701 ORTHO05D000531 1.3e-10 69.3 61 55.7
FAN23G2306 Fragaria x ananassa HOM05D000701 ORTHO05D000531 2.2e-10 68.6 61 57.4
FAN26G3459 Fragaria x ananassa HOM05D000701 ORTHO05D000531 2.2e-10 68.6 61 57.4
Haze_09758 Corylus avellana HOM05D000701 ORTHO05D000531 2.9e-10 68.2 61 52.5
FAN16G0669 Fragaria x ananassa HOM05D000701 ORTHO05D000531 2.9e-10 68.2 61 57.4
FAN25G3243 Fragaria x ananassa HOM05D000701 ORTHO05D000531 2.9e-10 68.2 61 57.4
TAR627G0513 Trochodendron aralioides HOM05D000701 ORTHO05D000531 3.8e-10 67.8 58 55.2
vmacro11578 Vaccinium macrocarpon HOM05D000701 ORTHO05D000531 8.4e-10 66.6 66 57.6
FAN28G1750 Fragaria x ananassa HOM05D000701 ORTHO05D000531 1.1e-09 66.2 65 52.3
HanXRQChr05g0159621 Helianthus annuus HOM05D000701 ORTHO05D000531 1.1e-09 66.2 59 55.9
Prupe.4G227400 Prunus persica HOM05D000701 ORTHO05D000531 1.4e-09 65.9 61 50.8
Dinv40810 Davidia involucrata HOM05D000701 ORTHO05D000531 1.9e-09 65.5 61 57.4
ECA246G3875 Erigeron canadensis HOM05D000701 ORTHO05D000531 1.9e-09 65.5 60 56.7
Prupe.4G227200 Prunus persica HOM05D000701 ORTHO05D000531 1.9e-09 65.5 63 50.8
CANSAT11G1543 Cannabis sativa HOM05D000701 ORTHO05D000531 2.4e-09 65.1 59 52.5
Ca_14773_v3 Cicer arietinum L. HOM05D000701 ORTHO05D000531 2.4e-09 65.1 64 53.1
ECA246G1574 Erigeron canadensis HOM05D000701 ORTHO05D000531 3.2e-09 64.7 65 49.2
MD11G1208100 Malus domestica HOM05D000701 ORTHO05D000531 4.2e-09 64.3 61 54.1
TWI38G0820 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 5.4e-09 63.9 59 57.6
Lj8A174T72 Lonicera japonica HOM05D000701 ORTHO05D000531 7.1e-09 63.5 57 56.1
Psat5g172720 Pisum sativum HOM05D000701 ORTHO05D000531 7.1e-09 63.5 60 55.0
EL10Ac9g23016 Beta vulgaris HOM05D000701 ORTHO05D000531 9.3e-09 63.2 59 50.8
QL02p033861 Quercus lobata HOM05D000701 ORTHO05D000531 9.3e-09 63.2 52 61.5
Cpa.g.sc12.226 Carica papaya HOM05D000701 ORTHO05D000531 1.2e-08 62.8 59 55.9
Rhsim06G0224800 Rhododendron simsii HOM05D000701 ORTHO05D000531 1.2e-08 62.8 60 55.0
Thecc.07G025400 Theobroma cacao HOM05D000701 ORTHO05D000531 1.6e-08 62.4 61 54.1
Lj6g0002476 Lotus japonicus HOM05D000701 ORTHO05D000531 2.1e-08 62.0 64 54.7
arahy.Tifrunner.gnm1.ann1.61HQPG Arachis hypogaea HOM05D000701 ORTHO05D000531 2.7e-08 61.6 60 53.3
Phvul.006G049700 Phaseolus vulgaris HOM05D000701 ORTHO05D000531 2.7e-08 61.6 66 51.5
TAR627G0799 Trochodendron aralioides HOM05D000701 ORTHO05D000531 4.6e-08 60.8 59 49.2
VMungo0540G1928 Vigna mungo HOM05D000701 ORTHO05D000531 6.0e-08 60.5 60 50.0
ECA246G0782 Erigeron canadensis HOM05D000701 ORTHO05D000531 7.9e-08 60.1 65 46.2
Manes.03G135200 Manihot esculenta HOM05D000701 ORTHO05D000531 7.9e-08 60.1 60 45.0
Peaxi162Scf00376g00017 Petunia axillaris HOM05D000701 ORTHO05D000531 7.9e-08 60.1 59 50.8
TAR627G1149 Trochodendron aralioides HOM05D000701 ORTHO05D000531 7.9e-08 60.1 59 49.2
CAN.G1152.6 Capsicum annuum HOM05D000701 ORTHO05D000531 1.0e-07 59.7 59 52.5
Haze_09757 Corylus avellana HOM05D000701 ORTHO05D000531 1.0e-07 59.7 61 44.3
TWI38G1644 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 1.3e-07 59.3 63 50.8
FAN27G1429 Fragaria x ananassa HOM05D000701 ORTHO05D000531 1.8e-07 58.9 57 45.6
Manes.03G134712 Manihot esculenta HOM05D000701 ORTHO05D000531 1.8e-07 58.9 60 45.0
Manes.03G134932 Manihot esculenta HOM05D000701 ORTHO05D000531 1.8e-07 58.9 60 45.0
Manes.03G135100 Manihot esculenta HOM05D000701 ORTHO05D000531 1.8e-07 58.9 60 45.0
RcHm_v2.0_Chr2g0123071 Rosa chinensis HOM05D000701 ORTHO05D000531 1.8e-07 58.9 65 47.7
Thecc.06G233300 Theobroma cacao HOM05D000701 ORTHO05D000531 1.8e-07 58.9 61 47.5
DCAR_017101 Daucus carota HOM05D000701 ORTHO05D000531 2.3e-07 58.5 56 55.4
Lsat_1_v5_gn_5_2901 Lactuca sativa HOM05D000701 ORTHO05D000531 2.3e-07 58.5 59 52.5
PSO384G2335 Papaver somniferum HOM05D000701 ORTHO05D000531 2.3e-07 58.5 61 47.5
Rhsim06G0224500 Rhododendron simsii HOM05D000701 ORTHO05D000531 2.3e-07 58.5 57 49.1
TWI39G1250 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 2.3e-07 58.5 58 53.4
FAN05G0218 Fragaria x ananassa HOM05D000701 ORTHO05D000531 3.0e-07 58.2 58 51.7
Glyma.08G323400 Glycine max HOM05D000701 ORTHO05D000531 3.0e-07 58.2 64 50.0
Sc13g0002650 Simmondsia chinensis HOM05D000701 ORTHO05D000531 3.0e-07 58.2 51 58.8
AT5G55340 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 3.9e-07 57.8 60 51.7
Manes.03G134802 Manihot esculenta HOM05D000701 ORTHO05D000531 3.9e-07 57.8 59 47.5
Cfa020263 Carpinus fangiana HOM05D000701 ORTHO05D000531 5.1e-07 57.4 61 42.6
PSO801G0045 Papaver somniferum HOM05D000701 ORTHO05D000531 5.1e-07 57.4 58 48.3
Dinv22220 Davidia involucrata HOM05D000701 ORTHO05D000531 6.7e-07 57.0 57 47.4
FvH4_1g26010 Fragaria vesca HOM05D000701 ORTHO05D000531 6.7e-07 57.0 50 52.0
FvH4_2g09840 Fragaria vesca HOM05D000701 ORTHO05D000531 6.7e-07 57.0 59 42.4
FvH4_6g44520 Fragaria vesca HOM05D000701 ORTHO05D000531 6.7e-07 57.0 56 51.8
Gohir.D13G140100 Gossypium hirsutum HOM05D000701 ORTHO05D000531 6.7e-07 57.0 56 46.4
Gorai.013G156700 Gossypium raimondii HOM05D000701 ORTHO05D000531 6.7e-07 57.0 56 46.4
TWI38G2406 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 6.7e-07 57.0 63 49.2
Aa31LG3G11280 Aethionema arabicum HOM05D000701 ORTHO05D000531 8.7e-07 56.6 64 48.4
Manes.03G134704 Manihot esculenta HOM05D000701 ORTHO05D000531 8.7e-07 56.6 59 47.5
TPR.G23576 Trifolium pratense HOM05D000701 ORTHO05D000531 8.7e-07 56.6 60 51.7
FAN09G2444 Fragaria x ananassa HOM05D000701 ORTHO05D000531 1.1e-06 56.2 54 50.0
HanXRQChr05g0159661 Helianthus annuus HOM05D000701 ORTHO05D000531 1.1e-06 56.2 61 47.5
Medtr3g055380 Medicago truncatula HOM05D000701 ORTHO05D000531 1.1e-06 56.2 60 53.3
PGR031G1301 Punica granatum HOM05D000701 ORTHO05D000531 1.1e-06 56.2 56 46.4
Aqoxy6G02923 Aquilegia oxysepala HOM05D000701 ORTHO05D000531 1.5e-06 55.8 64 40.6
BcaB01g04347 Brassica carinata HOM05D000701 ORTHO05D000531 1.5e-06 55.8 58 46.6
CiPaw.12G134600 Carya illinoinensis HOM05D000701 ORTHO05D000531 1.5e-06 55.8 55 49.1
FAN02G3836 Fragaria x ananassa HOM05D000701 ORTHO05D000531 1.5e-06 55.8 58 48.3
Glyma.18G087500 Glycine max HOM05D000701 ORTHO05D000531 1.5e-06 55.8 64 50.0
Glyma.18G088800 Glycine max HOM05D000701 ORTHO05D000531 1.5e-06 55.8 62 50.0
Glyma.18G089000 Glycine max HOM05D000701 ORTHO05D000531 1.5e-06 55.8 62 51.6
Dinv40815 Davidia involucrata HOM05D000701 ORTHO05D000531 1.9e-06 55.5 46 63.0
Phvul.006G049600 Phaseolus vulgaris HOM05D000701 ORTHO05D000531 1.9e-06 55.5 62 45.2
RcHm_v2.0_Chr6g0266201 Rosa chinensis HOM05D000701 ORTHO05D000531 1.9e-06 55.5 59 40.7
TWI39G1136 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 1.9e-06 55.5 63 41.3
LjContig00272g0025521 Lotus japonicus HOM05D000701 ORTHO05D000531 2.5e-06 55.1 58 46.6
Manes.03G134706 Manihot esculenta HOM05D000701 ORTHO05D000531 2.5e-06 55.1 59 45.8
THA.LOC104813436 Tarenaya hassleriana HOM05D000701 ORTHO05D000531 2.5e-06 55.1 61 47.5
A03p14130 Brassica napus HOM05D000701 ORTHO05D000531 3.3e-06 54.7 59 45.8
BraA03t10713Z Brassica rapa HOM05D000701 ORTHO05D000531 3.3e-06 54.7 59 45.8
CARHR268680 Cardamine hirsuta HOM05D000701 ORTHO05D000531 3.3e-06 54.7 56 50.0
Nn6g33579 Nelumbo nucifera HOM05D000701 ORTHO05D000531 3.3e-06 54.7 50 54.0
AL8G30890 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 4.3e-06 54.3 60 48.3
Thhalv10005628m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 4.3e-06 54.3 60 48.3
Gohir.A01G085250 Gossypium hirsutum HOM05D000701 ORTHO05D000531 4.3e-06 54.3 57 49.1
Gohir.D01G071600 Gossypium hirsutum HOM05D000701 ORTHO05D000531 4.3e-06 54.3 57 49.1
RcHm_v2.0_Chr6g0266251 Rosa chinensis HOM05D000701 ORTHO05D000531 4.3e-06 54.3 59 40.7
Carub.0008s1568 Capsella rubella HOM05D000701 ORTHO05D000531 5.6e-06 53.9 45 55.6
COL.COLO4_09748 Corchorus olitorius HOM05D002795 ORTHO05D003219 5.6e-06 53.9 57 43.9
Prupe.4G227300 Prunus persica HOM05D000701 ORTHO05D000531 5.6e-06 53.9 50 50.0
QL06p010985 Quercus lobata HOM05D000701 ORTHO05D000531 5.6e-06 53.9 47 55.3
Rhsim06G0224700 Rhododendron simsii HOM05D000701 ORTHO05D000531 5.6e-06 53.9 65 46.2
RcHm_v2.0_Chr2g0161741 Rosa chinensis HOM05D000701 ORTHO05D000531 5.6e-06 53.9 61 50.8
Duzib268G0195 Durio zibethinus HOM05D000701 ORTHO05D000531 7.4e-06 53.5 53 50.9
Solyc06g066630.1 Solanum lycopersicum HOM05D000701 ORTHO05D000531 7.4e-06 53.5 59 45.8
Sopen06g024900 Solanum pennellii HOM05D000701 ORTHO05D000531 7.4e-06 53.5 59 45.8
Thecc.04G013100 Theobroma cacao HOM05D000701 ORTHO05D000531 7.4e-06 53.5 62 43.5
Thecc.04G013300 Theobroma cacao HOM05D000701 ORTHO05D000531 7.4e-06 53.5 62 43.5
Migut.H01784 Erythranthe guttata HOM05D000701 ORTHO05D000531 9.6e-06 53.1 44 56.8
Thhalv10013992m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 9.6e-06 53.1 60 48.3
FAN14G4133 Fragaria x ananassa HOM05D000701 ORTHO05D000531 9.6e-06 53.1 55 49.1
Lj5P352T36 Lonicera japonica HOM05D000701 ORTHO05D000531 9.6e-06 53.1 59 44.1
MBI16_g31722_MAGBIO Magnolia biondii HOM05D000701 ORTHO05D000531 9.6e-06 53.1 55 43.6
PSO384G2122 Papaver somniferum HOM05D000701 ORTHO05D000531 9.6e-06 53.1 59 42.4
Thecc.07G025600 Theobroma cacao HOM05D000701 ORTHO05D000531 9.6e-06 53.1 54 50.0
TAR627G0292 Trochodendron aralioides HOM05D000701 ORTHO05D000531 9.6e-06 53.1 59 47.5


User provided reference genes

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