Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.6e-220 769.2 419 100.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.7e-212 741.9 426 91.3
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.1e-210 736.5 426 94.4
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.0e-203 713.4 426 92.7
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.7e-201 706.1 426 85.4
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.1e-200 703.4 426 89.2
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 5.9e-191 671.0 429 81.4
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 5.0e-190 667.9 425 81.4
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.9e-189 666.0 433 85.0
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.9e-189 666.0 429 81.1
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 6.8e-187 657.5 424 84.4
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 4.4e-186 654.8 435 80.9
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 9.8e-186 653.7 425 80.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 2.2e-185 652.5 426 81.9
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.2e-183 646.7 432 78.2
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.1e-181 640.2 432 80.3
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.5e-181 639.8 418 80.1
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 4.2e-181 638.3 430 78.4
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.6e-180 636.3 425 79.3
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 6.1e-180 634.4 426 78.2
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 8.8e-179 630.6 428 78.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 2.6e-178 629.0 461 74.8
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 5.7e-178 627.9 449 76.6
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.5e-178 627.5 435 80.0
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.3e-177 626.7 432 80.3
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.2e-177 625.9 429 78.6
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 6.3e-177 624.4 434 77.6
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.1e-176 623.6 416 82.0
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.1e-176 623.6 435 81.6
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.4e-176 623.2 427 81.5
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 3.1e-176 622.1 412 82.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 9.2e-176 620.5 434 76.0
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.0e-175 619.4 412 79.4
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.0e-175 619.4 412 79.4
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.0e-175 619.4 432 82.2
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 2.7e-175 619.0 416 76.7
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 3.5e-175 618.6 425 80.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 3.5e-175 618.6 412 79.1
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 3.5e-175 618.6 412 79.1
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 3.5e-175 618.6 412 79.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.9e-175 617.8 434 78.8
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 1.3e-174 616.7 430 76.7
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.3e-174 616.7 430 78.8
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.3e-174 616.7 413 78.9
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 2.3e-174 615.9 431 74.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.8e-174 615.1 424 76.2
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.5e-173 613.2 428 78.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.5e-173 613.2 428 74.8
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 2.8e-172 609.0 412 77.9
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.8e-172 609.0 412 77.9
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.7e-172 608.2 432 75.2
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 8.0e-172 607.4 412 77.7
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 8.0e-172 607.4 432 75.2
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 8.0e-172 607.4 430 75.1
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-171 607.1 432 75.2
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 6.8e-171 604.4 412 77.4
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.5e-170 603.2 432 75.0
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 5.7e-170 601.3 424 74.1
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 7.5e-170 600.9 416 75.2
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.9e-169 599.0 412 76.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 6.4e-169 597.8 418 74.9
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 8.3e-169 597.4 424 73.6
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 4.1e-168 595.1 430 73.5
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 4.1e-168 595.1 430 73.7
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 9.2e-168 594.0 430 72.8
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.6e-167 593.2 441 72.3
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 3.5e-167 592.0 429 71.8
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 4.6e-167 591.7 416 75.5
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 7.8e-167 590.9 472 69.7
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 1.7e-166 589.7 417 74.8
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 3.0e-166 589.0 420 73.8
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 3.0e-166 589.0 412 76.2
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 1.5e-165 586.6 449 72.8
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 1.9e-165 586.3 429 74.4
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.3e-165 585.5 426 77.0
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 7.3e-165 584.3 427 72.6
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.6e-164 583.2 430 72.6
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 1.8e-163 579.7 418 74.9
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 3.1e-163 578.9 397 75.8
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.2e-162 577.0 382 77.5
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.5e-162 576.6 430 72.3
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 3.4e-162 575.5 418 75.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 3.4e-162 575.5 437 71.6
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 5.8e-162 574.7 424 74.8
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 5.8e-162 574.7 410 80.2
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.5e-162 574.3 419 75.7
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 7.5e-162 574.3 424 72.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.4e-161 571.2 434 70.7
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 4.1e-160 568.5 422 71.3
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.2e-159 567.0 420 71.0
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.6e-159 565.1 467 70.0
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.6e-159 565.1 374 86.9
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 7.8e-159 564.3 415 70.8
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.7e-158 563.1 444 70.7
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 5.0e-158 561.6 424 71.2
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 6.6e-158 561.2 432 75.5
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 9.5e-157 557.4 431 68.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 4.4e-154 548.5 432 71.8
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 3.2e-152 542.3 426 70.7
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.3e-150 537.0 513 59.6
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.0e-150 535.8 465 66.7
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 5.1e-150 535.0 417 67.6
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.9e-149 533.1 521 62.4
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 7.3e-149 531.2 425 69.4
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.6e-148 530.0 425 67.5
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 6.2e-148 528.1 491 65.0
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.5e-146 523.5 379 78.1
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 3.8e-145 518.8 432 67.1
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 7.1e-144 514.6 388 77.1
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.2e-143 513.8 426 67.1
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.2e-143 513.8 392 70.7
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.8e-139 500.0 429 64.3
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.0e-134 484.2 417 63.1
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.7e-129 466.8 416 61.8
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.0e-126 457.6 396 65.4
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 9.6e-125 451.1 409 58.9
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.6e-124 450.3 439 56.9
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 4.8e-124 448.7 324 79.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 8.1e-124 448.0 421 62.9
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.0e-122 443.4 370 66.2
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 2.7e-119 433.0 406 57.1
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.3e-118 429.9 423 60.8
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 5.1e-118 428.7 426 56.8
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.3e-117 425.6 397 59.7
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 7.1e-112 408.3 340 65.9
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 9.7e-109 397.9 433 53.8
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.1e-99 366.3 353 58.6
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 9.8e-69 265.0 216 64.8
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.8e-60 236.9 375 39.2
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 2.3e-54 217.2 420 35.2
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 6.0e-42 176.0 209 59.8
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 4.0e-30 136.7 84 81.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.5e-18 97.1 46 95.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.5e-18 97.1 46 95.7
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 8.7e-17 92.4 55 81.8
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.1e-09 66.6 50 70.0


User provided reference genes

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