Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G426700 Gossypium raimondii HOM05D004486 ORTHO05D047388 2.3e-72 275.4 131 100.0
Gohir.D05G365432 Gossypium hirsutum HOM05D004486 ORTHO05D047388 5.4e-66 254.2 131 91.6
Gohir.A13G021200 Gossypium hirsutum HOM05D004486 ORTHO05D006329 6.9e-13 77.8 55 69.1
Gohir.D13G021700 Gossypium hirsutum HOM05D004486 ORTHO05D006329 2.6e-12 75.9 55 67.3
Gorai.013G024500 Gossypium raimondii HOM05D004486 ORTHO05D006329 2.6e-12 75.9 55 67.3
Gohir.D05G318432 Gossypium hirsutum HOM05D004486 ORTHO05D047591 2.5e-10 69.3 88 47.7
Gorai.009G341300 Gossypium raimondii HOM05D004486 ORTHO05D047591 2.5e-10 69.3 88 47.7
Gorai.013G157100 Gossypium raimondii HOM05D004486 ORTHO05D024415 7.2e-10 67.8 55 60.0
Duzib106G0308 Durio zibethinus HOM05D004486 ORTHO05D006329 1.6e-09 66.6 45 71.1
Duzib128G1554 Durio zibethinus HOM05D004486 ORTHO05D006329 3.5e-09 65.5 45 68.9
Thecc.10G065100 Theobroma cacao HOM05D004486 ORTHO05D006329 1.0e-08 63.9 69 55.1
Gohir.D04G090332 Gossypium hirsutum HOM05D004486 ORTHO05D024415 1.3e-08 63.5 40 72.5
Potri.008G045900 Populus trichocarpa HOM05D004486 ORTHO05D006329 3.9e-08 62.0 55 54.5
BcaNung01146 Brassica carinata HOM05D004486 ORTHO05D006329 8.7e-08 60.8 37 70.3
A02p02010 Brassica napus HOM05D004486 ORTHO05D006329 8.7e-08 60.8 37 70.3
BraA02t05173Z Brassica rapa HOM05D004486 ORTHO05D006329 8.7e-08 60.8 37 70.3
Medtr1g116230 Medicago truncatula HOM05D004486 ORTHO05D006329 8.7e-08 60.8 45 62.2
QL08p057259 Quercus lobata HOM05D004486 ORTHO05D006329 8.7e-08 60.8 37 73.0
CANSAT11G2341 Cannabis sativa HOM05D004486 ORTHO05D006329 1.1e-07 60.5 37 73.0
Psat6g239960 Pisum sativum HOM05D004486 ORTHO05D006329 1.1e-07 60.5 45 62.2
Sabra10G0166800 Salix brachista HOM05D004486 ORTHO05D006329 1.1e-07 60.5 45 60.0
Hma1.2p1_2685F.1_g326910 Hydrangea macrophylla HOM05D004486 ORTHO05D006329 1.5e-07 60.1 37 73.0
TWI38G2347 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 1.5e-07 60.1 37 73.0
vmacro07094 Vaccinium macrocarpon HOM05D004486 ORTHO05D006329 1.5e-07 60.1 55 58.2
arahy.Tifrunner.gnm1.ann1.GKFC1I Arachis hypogaea HOM05D004486 ORTHO05D006329 2.5e-07 59.3 45 60.0
Migut.F01788 Erythranthe guttata HOM05D004486 ORTHO05D006329 2.5e-07 59.3 37 70.3
Rhsim12G0129400 Rhododendron simsii HOM05D004486 ORTHO05D006329 2.5e-07 59.3 37 73.0
Aa31sc127G20 Aethionema arabicum HOM05D004486 ORTHO05D006329 4.3e-07 58.5 37 67.6
Ciclev10030974m.g Citrus clementina HOM05D004486 ORTHO05D006329 4.3e-07 58.5 55 54.5
EL10Ac2g03540 Beta vulgaris HOM05D004486 ORTHO05D006329 5.7e-07 58.2 55 50.9
ECA233G4916 Erigeron canadensis HOM05D004486 ORTHO05D006329 5.7e-07 58.2 37 70.3
TWI38G1612 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 5.7e-07 58.2 37 67.6
CARHR199920 Cardamine hirsuta HOM05D004486 ORTHO05D006329 7.4e-07 57.8 37 62.2
PGR044G2316 Punica granatum HOM05D004486 ORTHO05D006329 7.4e-07 57.8 37 67.6
THA.LOC104827314 Tarenaya hassleriana HOM05D004486 ORTHO05D006329 7.4e-07 57.8 37 67.6
BcaC04g19110 Brassica carinata HOM05D004486 ORTHO05D006329 9.7e-07 57.4 37 67.6
A10p24750 Brassica napus HOM05D004486 ORTHO05D006329 9.7e-07 57.4 37 67.6
C09p63580 Brassica napus HOM05D004486 ORTHO05D006329 9.7e-07 57.4 37 67.6
BolC9t59201H Brassica oleracea HOM05D004486 ORTHO05D006329 9.7e-07 57.4 37 67.6
BraA10t44538Z Brassica rapa HOM05D004486 ORTHO05D006329 9.7e-07 57.4 37 67.6
Carub.0006s1168 Capsella rubella HOM05D004486 ORTHO05D006329 9.7e-07 57.4 37 67.6
Atru.chr12.611 Acer truncatum HOM05D004486 ORTHO05D006329 1.3e-06 57.0 37 70.3
Lj5g0008233 Lotus japonicus HOM05D004486 ORTHO05D006329 1.3e-06 57.0 45 60.0
Prupe.2G220700 Prunus persica HOM05D004486 ORTHO05D006329 1.3e-06 57.0 37 67.6
arahy.Tifrunner.gnm1.ann1.Q6727A Arachis hypogaea HOM05D004486 ORTHO05D006329 1.6e-06 56.6 45 57.8
AL6G24140 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 2.2e-06 56.2 37 64.9
AT5G13520 Arabidopsis thaliana HOM05D004486 ORTHO05D006329 2.2e-06 56.2 37 64.9
BcaNung06330 Brassica carinata HOM05D004486 ORTHO05D024415 2.2e-06 56.2 37 64.9
Thhalv10012982m.g Eutrema salsugineum HOM05D004486 ORTHO05D006329 2.2e-06 56.2 37 64.9
Manes.18G141033 Manihot esculenta HOM05D004486 ORTHO05D006329 2.2e-06 56.2 37 67.6
Manes.18G141037 Manihot esculenta HOM05D004486 ORTHO05D006329 2.2e-06 56.2 37 67.6
Sed0016157 Sechium edule HOM05D004486 ORTHO05D006329 2.2e-06 56.2 55 50.9
TPR.G10423 Trifolium pratense HOM05D004486 ORTHO05D006329 2.2e-06 56.2 45 60.0
CiPaw.01G277900 Carya illinoinensis HOM05D004486 ORTHO05D006329 2.8e-06 55.8 37 62.2
MD01G1113900 Malus domestica HOM05D004486 ORTHO05D006329 2.8e-06 55.8 37 64.9
MD01G1114100 Malus domestica HOM05D004486 ORTHO05D006329 2.8e-06 55.8 37 64.9
MD07G1182000 Malus domestica HOM05D004486 ORTHO05D006329 2.8e-06 55.8 37 64.9
CSS0049406 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 3.7e-06 55.5 55 52.7
MSTRG.361 Avicennia marina HOM05D004486 ORTHO05D006329 4.8e-06 55.1 37 64.9
CSS0021534 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 4.8e-06 55.1 55 52.7
Cfa001575 Carpinus fangiana HOM05D004486 ORTHO05D006329 4.8e-06 55.1 37 62.2
Haze_16953 Corylus avellana HOM05D004486 ORTHO05D006329 4.8e-06 55.1 37 62.2
Manes.18G142200 Manihot esculenta HOM05D004486 ORTHO05D006329 4.8e-06 55.1 37 67.6
Sabra08G0032200 Salix brachista HOM05D004486 ORTHO05D006329 4.8e-06 55.1 37 64.9
Ca_11379_v3 Cicer arietinum L. HOM05D004486 ORTHO05D006329 6.3e-06 54.7 39 61.5
RcHm_v2.0_Chr1g0364401 Rosa chinensis HOM05D004486 ORTHO05D006329 8.2e-06 54.3 37 64.9
SalBow3G3918 Salvia bowleyana HOM05D004486 ORTHO05D006329 8.2e-06 54.3 37 64.9
Sp6g30500 Schrenkiella parvula HOM05D004486 ORTHO05D006329 8.2e-06 54.3 37 62.2


User provided reference genes

Program Settings