Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G413100 Gossypium raimondii HOM05D007927 ORTHO05D010029 3.9e-38 161.0 82 100.0
Gohir.D04G109100 Gossypium hirsutum HOM05D007927 ORTHO05D010029 4.0e-35 151.0 82 93.9
Gohir.D01G107700 Gossypium hirsutum HOM05D005170 ORTHO05D010029 5.3e-35 150.6 81 93.8
Gorai.010G138300 Gossypium raimondii HOM05D007927 ORTHO05D010029 1.5e-34 149.1 82 92.7
Gohir.D06G120200 Gossypium hirsutum HOM05D005170 ORTHO05D010029 2.6e-34 148.3 81 91.4
Gohir.D11G266900 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.7e-23 111.7 85 75.3
Gohir.D03G074800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 3.8e-17 91.3 47 93.6
Gohir.D09G047700 Gossypium hirsutum HOM05D007927 ORTHO05D010029 5.5e-16 87.4 49 85.7
Gohir.A09G004300 Gossypium hirsutum HOM05D007927 ORTHO05D010029 9.3e-16 86.7 46 91.3
Gohir.D09G003800 Gossypium hirsutum HOM05D007927 ORTHO05D010029 9.3e-16 86.7 46 91.3
Gorai.006G005200 Gossypium raimondii HOM05D007927 ORTHO05D010029 9.3e-16 86.7 46 91.3
Manes.13G085601 Manihot esculenta HOM05D007927 ORTHO05D010029 7.9e-15 83.6 47 83.0
Duzib264G0901 Durio zibethinus HOM05D007927 ORTHO05D010029 1.0e-14 83.2 46 87.0
Thecc.01G133600 Theobroma cacao HOM05D007927 ORTHO05D010029 1.0e-14 83.2 46 87.0
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 1.3e-14 82.8 47 83.0
Haze_25255 Corylus avellana HOM05D007927 ORTHO05D010029 2.3e-14 82.0 60 65.0
Atru.chr4.915 Acer truncatum HOM05D007927 ORTHO05D010029 3.0e-14 81.6 46 84.8
Ciclev10002360m.g Citrus clementina HOM05D007927 ORTHO05D010029 3.0e-14 81.6 46 84.8
Hma1.2p1_0476F.1_g160770 Hydrangea macrophylla HOM05D007927 ORTHO05D010029 3.0e-14 81.6 47 83.0
PGR102G3035 Punica granatum HOM05D007927 ORTHO05D010029 3.0e-14 81.6 47 80.9
Actinidia01389 Actinidia chinensis HOM05D007927 ORTHO05D010029 3.9e-14 81.3 47 80.9
GSVIVG01026475001 Vitis vinifera HOM05D007927 ORTHO05D010029 5.1e-14 80.9 47 80.9
QL10p043457 Quercus lobata HOM05D007927 ORTHO05D010029 6.7e-14 80.5 47 80.9
TAR628G1503 Trochodendron aralioides HOM05D007927 ORTHO05D010029 6.7e-14 80.5 47 80.9
Dinv24372 Davidia involucrata HOM05D007927 ORTHO05D010029 8.7e-14 80.1 47 80.9
Rhsim08G0002700 Rhododendron simsii HOM05D007927 ORTHO05D010029 8.7e-14 80.1 47 78.7
ClCG02G000450 Citrullus lanatus HOM05D007927 ORTHO05D010029 1.1e-13 79.7 47 76.6
COL.COLO4_35756 Corchorus olitorius HOM05D007927 ORTHO05D010029 1.1e-13 79.7 46 82.6
MELO3C023232.2 Cucumis melo HOM05D007927 ORTHO05D010029 1.1e-13 79.7 47 76.6
CsaV3_2G019410 Cucumis sativus L. HOM05D007927 ORTHO05D010029 1.1e-13 79.7 47 76.6
Lj4A837T13 Lonicera japonica HOM05D007927 ORTHO05D010029 1.1e-13 79.7 48 79.2
TWI75G1488 Tripterygium wilfordii HOM05D007927 ORTHO05D010029 1.1e-13 79.7 46 82.6
CiPaw.04G081700 Carya illinoinensis HOM05D007927 ORTHO05D010029 1.5e-13 79.3 47 78.7
Potri.005G063600 Populus trichocarpa HOM05D007927 ORTHO05D010029 1.5e-13 79.3 46 80.4
Sabra05G0052800 Salix brachista HOM05D007927 ORTHO05D010029 1.9e-13 79.0 46 78.3
vmacro18670 Vaccinium macrocarpon HOM05D007927 ORTHO05D010029 1.9e-13 79.0 47 76.6
Cpa.g.sc42.162 Carica papaya HOM05D007927 ORTHO05D010029 2.5e-13 78.6 47 76.6
DCAR_014334 Daucus carota HOM05D007927 ORTHO05D010029 2.5e-13 78.6 86 54.7
Dinv07117 Davidia involucrata HOM05D007927 ORTHO05D010029 2.5e-13 78.6 47 78.7
MBI03_g37385_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 2.5e-13 78.6 47 78.7
MBI03_g42544_MAGBIO Magnolia biondii HOM05D007927 ORTHO05D010029 2.5e-13 78.6 47 78.7
Phvul.002G272300 Phaseolus vulgaris HOM05D007927 ORTHO05D010029 2.5e-13 78.6 48 77.1
VMungo0251G0724 Vigna mungo HOM05D007927 ORTHO05D010029 2.5e-13 78.6 48 77.1
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 3.3e-13 78.2 48 75.0
Psat7g045960 Pisum sativum HOM05D007927 ORTHO05D010029 3.3e-13 78.2 48 75.0
TPR.G37352 Trifolium pratense HOM05D007927 ORTHO05D010029 3.3e-13 78.2 48 75.0
Aqoxy5G02324 Aquilegia oxysepala HOM05D007927 ORTHO05D010029 4.3e-13 77.8 48 75.0
Glyma.05G191900 Glycine max HOM05D007927 ORTHO05D010029 4.3e-13 77.8 48 75.0
Medtr8g093750 Medicago truncatula HOM05D007927 ORTHO05D010029 4.3e-13 77.8 48 72.9
Sabra07G0086100 Salix brachista HOM05D007927 ORTHO05D010029 4.3e-13 77.8 46 78.3
Eucgr.J01289 Eucalyptus grandis HOM05D007927 ORTHO05D010029 5.7e-13 77.4 47 76.6
Nn1g06275 Nelumbo nucifera HOM05D007927 ORTHO05D010029 5.7e-13 77.4 46 78.3
CSS0028810 Camellia sinensis var. sinensis HOM05D007927 ORTHO05D010029 1.3e-12 76.3 47 76.6
FvH4_1g24440 Fragaria vesca HOM05D007927 ORTHO05D010029 1.6e-12 75.9 47 72.3
FAN19G2953 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.6e-12 75.9 47 72.3
FAN23G1573 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.6e-12 75.9 47 72.3
FAN28G0845 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.6e-12 75.9 47 72.3
Lalb_Chr07g0184391 Lupinus albus HOM05D007927 ORTHO05D010029 1.6e-12 75.9 48 72.9
CDE02G1961 Ceratophyllum demersum HOM05D007927 ORTHO05D010029 2.1e-12 75.5 48 70.8
Lj4g0020524 Lotus japonicus HOM05D007927 ORTHO05D010029 2.1e-12 75.5 48 70.8
Prupe.4G271700 Prunus persica HOM05D007927 ORTHO05D010029 2.1e-12 75.5 47 74.5
ATR0584G243 Amborella trichopoda HOM05D007927 ORTHO05D010029 2.8e-12 75.1 47 74.5
FAN26G1905 Fragaria x ananassa HOM05D007927 ORTHO05D010029 2.8e-12 75.1 51 66.7
FvH4_1g24060 Fragaria vesca HOM05D007927 ORTHO05D010029 3.7e-12 74.7 53 66.0
RcHm_v2.0_Chr2g0121541 Rosa chinensis HOM05D007927 ORTHO05D010029 3.7e-12 74.7 47 70.2
HanXRQChr12g0380561 Helianthus annuus HOM05D007927 ORTHO05D010029 8.2e-12 73.6 80 53.8
MD01G1005400 Malus domestica HOM05D007927 ORTHO05D010029 1.1e-11 73.2 47 70.2
Lsat_1_v5_gn_5_69000 Lactuca sativa HOM05D007927 ORTHO05D010029 1.4e-11 72.8 80 53.8
ECA233G3055 Erigeron canadensis HOM05D007927 ORTHO05D010029 3.1e-11 71.6 80 52.5
FAN19G2631 Fragaria x ananassa HOM05D007927 ORTHO05D010029 3.1e-11 71.6 51 66.7
SEGI_35752 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 2.0e-10 68.9 47 63.8
SEGI_09554 Sequoiadendron giganteum HOM05D007927 ORTHO05D010029 3.4e-10 68.2 46 65.2
FAN23G0137 Fragaria x ananassa HOM05D007927 ORTHO05D010029 1.0e-09 66.6 49 61.2
Pp3c24_20210 Physcomitrium patens HOM05D007927 ORTHO05D010029 1.3e-09 66.2 86 46.5
Gohir.A07G178500 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.9e-09 65.1 34 97.1
Gohir.D07G185600 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.9e-09 65.1 34 97.1
Gorai.001G206200 Gossypium raimondii HOM05D005170 ORTHO05D006985 2.9e-09 65.1 34 97.1
Gohir.D06G077800 Gossypium hirsutum HOM05D005170 ORTHO05D006985 3.8e-09 64.7 35 94.3
Thecc.04G110100 Theobroma cacao HOM05D005170 ORTHO05D006985 1.9e-08 62.4 34 91.2
COL.COLO4_00229 Corchorus olitorius HOM05D005170 ORTHO05D006985 3.2e-08 61.6 41 73.2
Gohir.D06G152650 Gossypium hirsutum HOM05D000165 ORTHO05D004914 3.2e-08 61.6 70 54.3
ClCG07G016130 Citrullus lanatus HOM05D005170 ORTHO05D006985 1.2e-07 59.7 33 87.9
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 1.6e-07 59.3 34 82.4
Gorai.010G178400 Gossypium raimondii HOM05D000165 ORTHO05D004914 2.1e-07 58.9 34 88.2
Mapoly0115s0058 Marchantia polymorpha HOM05D007927 ORTHO05D010029 2.1e-07 58.9 47 57.4
Os12g0189700 Oryza sativa ssp. japonica HOM05D007927 ORTHO05D010029 2.1e-07 58.9 46 56.5
CANSAT64G0674 Cannabis sativa HOM05D005170 ORTHO05D006985 2.7e-07 58.5 34 82.4
arahy.Tifrunner.gnm1.ann1.66GFWV Arachis hypogaea HOM05D005170 ORTHO05D006985 3.5e-07 58.2 34 82.4
AagrBONN_evm.TU.Sc2ySwM_344.4939 Anthoceros agrestis HOM05D007927 ORTHO05D010029 4.6e-07 57.8 47 55.3
Cfa007711 Carpinus fangiana HOM05D005170 ORTHO05D006985 4.6e-07 57.8 34 82.4
QL02p064873 Quercus lobata HOM05D005170 ORTHO05D006985 4.6e-07 57.8 34 82.4
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 6.1e-07 57.4 33 84.8
CiPaw.03G081400 Carya illinoinensis HOM05D005170 ORTHO05D006985 7.9e-07 57.0 34 82.4
CsaV3_4G009930 Cucumis sativus L. HOM05D005170 ORTHO05D006985 7.9e-07 57.0 33 81.8
arahy.Tifrunner.gnm1.ann1.3DLK77 Arachis hypogaea HOM05D005170 ORTHO05D006985 1.0e-06 56.6 34 79.4
MELO3C018906.2 Cucumis melo HOM05D005170 ORTHO05D006985 1.0e-06 56.6 33 81.8
Manes.01G104800 Manihot esculenta HOM05D005170 ORTHO05D006985 1.3e-06 56.2 34 79.4
Sed0018763 Sechium edule HOM05D005170 ORTHO05D006985 1.3e-06 56.2 32 84.4
VMungo1383G1046 Vigna mungo HOM05D005170 ORTHO05D006985 1.3e-06 56.2 34 79.4
Glyma.18G276300 Glycine max HOM05D005170 ORTHO05D006985 1.8e-06 55.8 34 79.4
Lalb_Chr10g0092611 Lupinus albus HOM05D005170 ORTHO05D006985 1.8e-06 55.8 34 79.4
Phvul.008G024500 Phaseolus vulgaris HOM05D005170 ORTHO05D006985 2.3e-06 55.5 34 79.4
Ciclev10011153m.g Citrus clementina HOM05D005170 ORTHO05D006985 3.0e-06 55.1 34 79.4
Eucgr.I02082 Eucalyptus grandis HOM05D005170 ORTHO05D006985 3.0e-06 55.1 34 79.4
Lj1g0005667 Lotus japonicus HOM05D005170 ORTHO05D006985 3.9e-06 54.7 32 81.2
CARHR263780 Cardamine hirsuta HOM05D005170 ORTHO05D006985 5.1e-06 54.3 48 56.2
Glyma.08G253900 Glycine max HOM05D005170 ORTHO05D006985 5.1e-06 54.3 34 76.5
MD09G1076900 Malus domestica HOM05D005170 ORTHO05D006985 5.1e-06 54.3 34 79.4
Prupe.3G247200 Prunus persica HOM05D005170 ORTHO05D006985 5.1e-06 54.3 34 79.4
THA.LOC104805534 Tarenaya hassleriana HOM05D005170 ORTHO05D006985 5.1e-06 54.3 34 76.5
Aa31LG9G16850 Aethionema arabicum HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
AL7G51600 Arabidopsis lyrata HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
AT5G38840 Arabidopsis thaliana HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
BcaB06g27252 Brassica carinata HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
BcaC02g09673 Brassica carinata HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
C04p45420 Brassica napus HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
BolC4t26124H Brassica oleracea HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
Thhalv10027659m.g Eutrema salsugineum HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 73.5
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 6.7e-06 53.9 34 76.5
Sabra04G0072900 Salix brachista HOM05D005170 ORTHO05D006985 8.7e-06 53.5 34 73.5


User provided reference genes

Program Settings