Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 3.6e-180 634.8 318 100.0
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.0e-179 631.7 318 99.4
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.6e-175 618.6 318 97.2
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.8e-150 535.0 324 83.3
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.3e-129 466.8 288 79.9
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 4.9e-129 464.9 294 77.9
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 4.9e-129 464.9 294 77.9
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 6.4e-129 464.5 299 78.6
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.4e-128 463.4 311 76.2
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 3.2e-128 462.2 301 77.1
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 7.8e-127 457.6 288 81.6
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.7e-126 456.4 301 76.7
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 5.0e-126 454.9 315 75.2
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.5e-125 452.6 301 77.4
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 5.6e-125 451.4 316 71.8
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 7.3e-125 451.1 316 71.2
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.2e-124 450.3 318 74.8
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.6e-124 449.9 266 82.7
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.1e-123 447.2 309 73.1
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.1e-123 447.2 278 80.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.4e-123 446.8 305 75.1
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 1.8e-123 446.4 263 83.3
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.3e-123 446.0 316 73.7
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 5.2e-123 444.9 313 71.9
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 8.9e-123 444.1 281 78.6
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.2e-122 443.7 317 72.2
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.5e-122 443.4 303 75.2
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.5e-122 443.4 300 75.0
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 2.6e-122 442.6 285 77.5
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 7.5e-122 441.0 290 76.2
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 9.9e-122 440.7 309 75.4
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 9.9e-122 440.7 309 73.1
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 1.3e-121 440.3 287 77.4
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.7e-121 439.9 291 76.3
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.7e-121 439.9 292 74.3
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.2e-121 439.5 279 76.7
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 6.4e-121 438.0 306 73.5
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 8.3e-121 437.6 303 73.6
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.1e-120 437.2 255 82.7
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 1.1e-120 437.2 309 72.2
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.1e-120 437.2 289 75.8
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.4e-120 436.8 255 83.1
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.4e-120 436.8 255 83.5
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.9e-120 436.4 255 83.1
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.4e-120 436.0 295 74.6
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 2.4e-120 436.0 266 80.8
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.4e-120 436.0 285 76.5
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 3.2e-120 435.6 255 83.1
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 3.2e-120 435.6 274 79.2
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 4.1e-120 435.3 309 71.2
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 7.1e-120 434.5 309 70.9
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 9.2e-120 434.1 301 73.8
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 2.1e-119 433.0 265 79.6
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-119 433.0 291 74.9
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.1e-119 433.0 259 82.2
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.1e-119 433.0 274 78.8
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.7e-119 432.6 310 69.7
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.5e-119 432.2 292 74.3
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 4.6e-119 431.8 283 75.6
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 6.0e-119 431.4 276 76.1
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.8e-119 431.0 334 68.3
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.0e-118 430.6 334 68.3
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.3e-118 429.5 302 71.5
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.3e-118 429.5 292 74.7
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 3.0e-118 429.1 308 72.1
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 5.1e-118 428.3 262 79.8
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 6.6e-118 427.9 256 81.2
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 6.6e-118 427.9 281 73.7
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 8.6e-118 427.6 256 81.2
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 8.6e-118 427.6 256 81.2
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.9e-117 426.4 283 74.6
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 4.3e-117 425.2 263 78.7
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 5.6e-117 424.9 302 71.9
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 9.5e-117 424.1 256 80.9
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 9.5e-117 424.1 313 70.3
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.2e-116 423.7 302 71.5
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 3.6e-116 422.2 263 78.7
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 4.7e-116 421.8 302 70.9
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.7e-116 421.8 281 72.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.2e-116 421.4 316 68.7
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.1e-115 420.6 329 66.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.1e-115 420.6 306 70.9
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.9e-115 417.5 329 65.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.9e-115 417.5 296 70.6
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.5e-114 416.8 258 78.3
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 4.4e-114 415.2 299 68.6
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 7.6e-114 414.5 335 63.6
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.9e-112 409.8 244 82.8
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.4e-112 409.5 259 76.8
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 3.2e-112 409.1 305 68.9
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.6e-111 406.8 261 75.9
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.7e-111 406.0 289 72.0
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.7e-110 403.3 243 85.6
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.5e-109 399.4 295 67.8
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 8.1e-108 394.4 247 78.1
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 6.9e-107 391.3 292 69.2
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.8e-105 385.6 301 68.4
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 4.9e-105 385.2 276 67.8
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.9e-104 383.3 225 80.4
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.2e-104 382.5 308 65.6
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-103 379.8 279 70.3
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 4.6e-103 378.6 251 75.3
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.3e-102 376.3 264 72.7
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.0e-102 375.9 260 70.4
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.6e-102 374.8 376 55.9
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.4e-99 367.1 296 67.2
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.8e-99 366.7 235 76.2
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 5.3e-99 365.2 258 71.3
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.2e-98 364.0 260 69.2
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.0e-98 363.2 264 67.4
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.9e-97 358.6 262 67.2
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 7.1e-96 354.8 260 66.2
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 7.4e-93 344.7 233 76.0
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-91 340.9 264 66.7
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.1e-88 330.9 252 68.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.1e-88 330.9 262 61.1
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.1e-88 330.9 261 66.3
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 4.2e-88 328.9 271 60.1
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.3e-84 317.4 310 58.4
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 6.9e-83 311.6 247 66.8
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.5e-80 303.1 177 82.5
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.3e-78 297.4 275 58.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.6e-76 290.4 233 64.4
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.8e-75 287.0 172 80.8
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.1e-71 273.5 178 73.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.0e-70 269.6 178 73.0
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 8.2e-68 261.5 141 88.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.4e-64 250.8 170 72.9
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 5.5e-64 248.8 176 72.2
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 9.4e-64 248.1 145 82.1
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.1e-63 246.9 186 68.3
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.4e-59 234.2 258 47.7
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.8e-52 209.9 168 65.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.0e-50 203.8 122 80.3
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 4.5e-50 202.6 119 82.4
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 4.5e-50 202.6 119 82.4
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.3e-49 201.1 121 80.2
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 6.5e-49 198.7 135 81.5
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 2.5e-48 196.8 141 69.5
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.2e-44 183.7 113 78.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 2.9e-41 173.3 108 79.6
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.0e-38 163.3 141 57.4
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.4e-37 159.8 110 70.9
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 9.1e-35 151.8 274 37.6
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 4.5e-34 149.4 129 51.9
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 2.5e-32 143.7 97 72.2
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 5.5e-32 142.5 113 61.1
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 2.8e-31 140.2 101 71.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.0e-30 136.7 157 47.8
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 2.0e-29 134.0 191 42.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.1e-23 114.0 72 76.4
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 8.0e-23 112.1 70 80.0
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-21 108.2 113 54.0
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.0e-21 107.5 74 67.6
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.2e-20 104.0 197 38.6
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-19 101.7 71 66.2
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 2.5e-16 90.5 59 72.9
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 2.5e-16 90.5 59 72.9
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.3e-16 89.7 70 65.7
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 3.7e-12 76.6 46 78.3
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.7e-09 67.8 243 23.9
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.4e-06 58.2 34 76.5


User provided reference genes

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