Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G398300 Gossypium raimondii HOM05D000536 ORTHO05D004254 9.2e-47 189.9 97 100.0
Gohir.D04G095600 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.4e-39 166.0 93 93.5
Gohir.A10G165700 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.6e-38 162.5 98 86.7
Gohir.D10G171900 Gossypium hirsutum HOM05D000536 ORTHO05D004254 4.6e-38 161.0 98 85.7
Gorai.011G192000 Gossypium raimondii HOM05D000536 ORTHO05D004254 4.6e-38 161.0 98 85.7
Gohir.A04G054932 Gossypium hirsutum HOM05D001522 ORTHO05D004254 6.6e-37 157.1 87 92.0
Gohir.A07G100800 Gossypium hirsutum HOM05D001522 ORTHO05D004254 1.9e-36 155.6 87 89.7
Gohir.A04G015700 Gossypium hirsutum HOM05D000536 ORTHO05D004254 2.5e-36 155.2 95 84.2
Gohir.A10G127085 Gossypium hirsutum HOM05D000536 ORTHO05D004254 5.6e-36 154.1 93 87.1
Gohir.A01G177650 Gossypium hirsutum HOM05D000536 ORTHO05D004254 7.3e-36 153.7 93 86.0
Gohir.A09G213150 Gossypium hirsutum HOM05D000536 ORTHO05D004254 1.4e-34 149.4 93 84.9
Gohir.A01G038300 Gossypium hirsutum HOM05D000536 ORTHO05D004254 2.6e-33 145.2 93 81.7
Gohir.A12G082966 Gossypium hirsutum HOM05D000536 ORTHO05D004254 5.8e-33 144.1 93 82.8
Thecc.04G287700 Theobroma cacao HOM05D000536 ORTHO05D004254 8.7e-29 130.2 103 72.8
Duzib151G0729 Durio zibethinus HOM05D000536 ORTHO05D004254 1.5e-28 129.4 103 71.8
Gohir.D02G055300 Gossypium hirsutum HOM05D000536 ORTHO05D004254 2.5e-28 128.6 103 69.9
Gorai.005G061200 Gossypium raimondii HOM05D000536 ORTHO05D004254 2.5e-28 128.6 103 69.9
Gohir.A02G050200 Gossypium hirsutum HOM05D000536 ORTHO05D004254 4.3e-28 127.9 103 69.9
Duzib212G0170 Durio zibethinus HOM05D000536 ORTHO05D004254 7.4e-28 127.1 103 71.8
Duzib052G0143 Durio zibethinus HOM05D000536 ORTHO05D004254 9.6e-28 126.7 103 69.9
COL.COLO4_13830 Corchorus olitorius HOM05D000536 ORTHO05D004254 2.9e-24 115.2 99 69.7
Cpa.g.sc16.198 Carica papaya HOM05D000536 ORTHO05D004254 3.8e-24 114.8 101 65.3
Manes.03G197600 Manihot esculenta HOM05D000536 ORTHO05D004254 1.4e-23 112.8 98 63.3
Glyma.09G043000 Glycine max HOM05D000536 ORTHO05D004254 3.2e-23 111.7 96 64.6
Prupe.1G132800 Prunus persica HOM05D000536 ORTHO05D004254 3.2e-23 111.7 97 66.0
MD16G1166100 Malus domestica HOM05D000536 ORTHO05D004254 7.1e-23 110.5 96 63.5
Manes.03G197700 Manihot esculenta HOM05D000536 ORTHO05D004254 9.3e-23 110.2 98 63.3
Atru.chr6.1992 Acer truncatum HOM05D000536 ORTHO05D004254 1.2e-22 109.8 98 61.2
Potri.008G219900 Populus trichocarpa HOM05D000536 ORTHO05D004254 1.2e-22 109.8 99 62.6
MD13G1166300 Malus domestica HOM05D000536 ORTHO05D004254 1.6e-22 109.4 96 63.5
CSS0049917 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D004254 2.1e-22 109.0 98 63.3
Gohir.A09G237900 Gossypium hirsutum HOM05D000536 ORTHO05D004254 2.1e-22 109.0 91 65.9
CANSAT78G2174 Cannabis sativa HOM05D000536 ORTHO05D004254 3.5e-22 108.2 97 63.9
VMungo1309G0888 Vigna mungo HOM05D000536 ORTHO05D004254 3.5e-22 108.2 96 63.5
Ciclev10007063m.g Citrus clementina HOM05D000536 ORTHO05D004254 6.0e-22 107.5 96 59.4
Glyma.09G043100 Glycine max HOM05D000536 ORTHO05D004254 1.0e-21 106.7 99 60.6
arahy.Tifrunner.gnm1.ann1.4W0AQG Arachis hypogaea HOM05D000536 ORTHO05D004254 1.3e-21 106.3 102 61.8
CSS0023906 Camellia sinensis var. sinensis HOM05D000536 ORTHO05D004254 1.3e-21 106.3 93 65.6
Glyma.15G150000 Glycine max HOM05D000536 ORTHO05D004254 1.3e-21 106.3 99 60.6
Glyma.15G150100 Glycine max HOM05D000536 ORTHO05D004254 3.0e-21 105.1 91 63.7
arahy.Tifrunner.gnm1.ann1.R1TXIV Arachis hypogaea HOM05D000536 ORTHO05D004254 3.9e-21 104.8 97 63.9
TWI73G0850 Tripterygium wilfordii HOM05D000536 ORTHO05D004254 5.1e-21 104.4 96 60.4
TAR636G1218 Trochodendron aralioides HOM05D000536 ORTHO05D004254 5.1e-21 104.4 96 62.5
Sabra08G0151900 Salix brachista HOM05D000536 ORTHO05D004254 1.1e-20 103.2 93 60.2
Phvul.009G249800 Phaseolus vulgaris HOM05D000536 ORTHO05D004254 1.5e-20 102.8 98 60.2
Cc03_g01640 Coffea canephora HOM05D000536 ORTHO05D004254 3.3e-20 101.7 101 59.4
Ah.13g074860 Amaranthus hybridus HOM05D000536 ORTHO05D004254 7.4e-20 100.5 82 63.4
CiPaw.02G080600 Carya illinoinensis HOM05D000536 ORTHO05D004254 7.4e-20 100.5 97 58.8
Gorai.006G261500 Gossypium raimondii HOM05D000536 ORTHO05D004254 7.4e-20 100.5 80 67.5
Hma1.2p1_0804F.1_g220960 Hydrangea macrophylla HOM05D000536 ORTHO05D004254 9.6e-20 100.1 98 59.2
CiPaw.01G146200 Carya illinoinensis HOM05D000536 ORTHO05D004254 1.3e-19 99.8 98 61.2
Lalb_Chr18g0054381 Lupinus albus HOM05D000536 ORTHO05D004254 1.3e-19 99.8 97 62.9
Phvul.009G249900 Phaseolus vulgaris HOM05D000536 ORTHO05D004254 1.3e-19 99.8 96 58.3
RcHm_v2.0_Chr4g0423081 Rosa chinensis HOM05D000536 ORTHO05D004254 1.3e-19 99.8 97 58.8
MELO3C021317.2 Cucumis melo HOM05D000536 ORTHO05D004254 1.6e-19 99.4 93 61.3
TWI09G0576 Tripterygium wilfordii HOM05D000536 ORTHO05D004254 1.6e-19 99.4 97 58.8
Actinidia14286 Actinidia chinensis HOM05D000536 ORTHO05D004254 2.1e-19 99.0 96 61.5
Actinidia27754 Actinidia chinensis HOM05D000536 ORTHO05D004254 2.1e-19 99.0 96 61.5
VMungo1309G0043 Vigna mungo HOM05D000536 ORTHO05D004254 2.1e-19 99.0 91 61.5
FAN07G0107 Fragaria x ananassa HOM05D000536 ORTHO05D004254 3.7e-19 98.2 97 56.7
FAN17G2272 Fragaria x ananassa HOM05D000536 ORTHO05D004254 3.7e-19 98.2 97 56.7
TPR.G3203 Trifolium pratense HOM05D000536 ORTHO05D004254 3.7e-19 98.2 109 56.9
Actinidia40293 Actinidia chinensis HOM05D000536 ORTHO05D004254 4.8e-19 97.8 95 60.0
PGR031G2502 Punica granatum HOM05D000536 ORTHO05D004254 4.8e-19 97.8 98 55.1
ClCG06G005020 Citrullus lanatus HOM05D000536 ORTHO05D004254 6.2e-19 97.4 93 58.1
FAN12G3024 Fragaria x ananassa HOM05D000536 ORTHO05D004254 6.2e-19 97.4 97 56.7
FAN12G3095 Fragaria x ananassa HOM05D000536 ORTHO05D004254 6.2e-19 97.4 97 56.7
EL10Ac3g06629 Beta vulgaris HOM05D000536 ORTHO05D004254 8.2e-19 97.1 96 56.2
Ca_21483_v3 Cicer arietinum L. HOM05D000536 ORTHO05D004254 8.2e-19 97.1 84 63.1
CsaV3_6G023900 Cucumis sativus L. HOM05D000536 ORTHO05D004254 8.2e-19 97.1 93 59.1
DCAR_002475 Daucus carota HOM05D000536 ORTHO05D004254 8.2e-19 97.1 69 71.0
Lalb_Chr15g0085991 Lupinus albus HOM05D000536 ORTHO05D004254 8.2e-19 97.1 75 70.7
Aa31LG10G6210 Aethionema arabicum HOM05D000536 ORTHO05D004254 1.4e-18 96.3 101 54.5
arahy.Tifrunner.gnm1.ann1.U7S8TD Arachis hypogaea HOM05D000536 ORTHO05D004254 1.4e-18 96.3 102 56.9
AUR62018090 Chenopodium quinoa HOM05D000536 ORTHO05D004254 1.4e-18 96.3 74 64.9
PSO170G5413 Papaver somniferum HOM05D000536 ORTHO05D004254 1.4e-18 96.3 61 75.4
PSO832G2216 Papaver somniferum HOM05D000536 ORTHO05D004254 1.4e-18 96.3 64 71.9
Actinidia19580 Actinidia chinensis HOM05D000536 ORTHO05D004254 1.8e-18 95.9 87 59.8
Hma1.2p1_0078F.1_g040390 Hydrangea macrophylla HOM05D000536 ORTHO05D004254 1.8e-18 95.9 97 58.8
Lj4g0016938 Lotus japonicus HOM05D000536 ORTHO05D004254 1.8e-18 95.9 71 69.0
THA.LOC104821782 Tarenaya hassleriana HOM05D000536 ORTHO05D004254 1.8e-18 95.9 75 68.0
Medtr4g120150 Medicago truncatula HOM05D000536 ORTHO05D004254 2.4e-18 95.5 108 56.5
Aqoxy5G00774 Aquilegia oxysepala HOM05D000536 ORTHO05D004254 3.1e-18 95.1 95 54.7
arahy.Tifrunner.gnm1.ann1.RH60A4 Arachis hypogaea HOM05D000536 ORTHO05D004254 3.1e-18 95.1 102 55.9
BcaB04g18343 Brassica carinata HOM05D000536 ORTHO05D004254 3.1e-18 95.1 101 53.5
FvH4_4g18520 Fragaria vesca HOM05D000536 ORTHO05D004254 3.1e-18 95.1 92 58.7
PSO210G1242 Papaver somniferum HOM05D000536 ORTHO05D004254 3.1e-18 95.1 64 70.3
PSO407G0346 Papaver somniferum HOM05D000536 ORTHO05D004254 3.1e-18 95.1 61 73.8
TAR365G0508 Trochodendron aralioides HOM05D000536 ORTHO05D004254 3.1e-18 95.1 96 59.4
Sed0005753 Sechium edule HOM05D000536 ORTHO05D004254 4.0e-18 94.7 93 57.0
Sed0023001 Sechium edule HOM05D000536 ORTHO05D004254 4.0e-18 94.7 93 58.1
ClCG05G006200 Citrullus lanatus HOM05D000536 ORTHO05D004254 5.3e-18 94.4 93 58.1
MELO3C006677.2 Cucumis melo HOM05D000536 ORTHO05D004254 5.3e-18 94.4 83 61.4
CsaV3_3G014810 Cucumis sativus L. HOM05D000536 ORTHO05D004254 5.3e-18 94.4 83 61.4
AL7G39340 Arabidopsis lyrata HOM05D000536 ORTHO05D004254 9.0e-18 93.6 101 53.5
Thhalv10026570m.g Eutrema salsugineum HOM05D000536 ORTHO05D004254 9.0e-18 93.6 101 53.5
Cfa015416 Carpinus fangiana HOM05D000536 ORTHO05D004254 1.2e-17 93.2 99 54.5
Migut.G00136 Erythranthe guttata HOM05D000536 ORTHO05D004254 1.2e-17 93.2 64 71.9
Lj6g0002547 Lotus japonicus HOM05D000536 ORTHO05D004254 1.5e-17 92.8 64 73.4
AUR62032013 Chenopodium quinoa HOM05D000536 ORTHO05D004254 2.0e-17 92.4 93 59.1
TAR633G2035 Trochodendron aralioides HOM05D000536 ORTHO05D004254 2.0e-17 92.4 91 57.1
Carub.0007s2573 Capsella rubella HOM05D000536 ORTHO05D004254 2.6e-17 92.0 101 52.5
CARHR290480 Cardamine hirsuta HOM05D000536 ORTHO05D004254 3.4e-17 91.7 102 52.9
CDE02G3548 Ceratophyllum demersum HOM05D000536 ORTHO05D004254 3.4e-17 91.7 79 59.5
HanXRQChr03g0089501 Helianthus annuus HOM05D000536 ORTHO05D004254 3.4e-17 91.7 71 64.8
Nitab4.5_0000513g0120 Nicotiana tabacum HOM05D000536 ORTHO05D004254 3.4e-17 91.7 98 56.1
Nitab4.5_0002628g0050 Nicotiana tabacum HOM05D000536 ORTHO05D004254 3.4e-17 91.7 98 56.1
Psat4g025240 Pisum sativum HOM05D000536 ORTHO05D004254 3.4e-17 91.7 103 56.3
Sc13g0003310 Simmondsia chinensis HOM05D000536 ORTHO05D004254 3.4e-17 91.7 96 53.1
Nn4g25774 Nelumbo nucifera HOM05D000536 ORTHO05D004254 4.5e-17 91.3 97 52.6
AT4G15930 Arabidopsis thaliana HOM05D000536 ORTHO05D004254 5.8e-17 90.9 96 55.2
HPP92_002151 Vanilla planifolia HOM05D000536 ORTHO05D004254 5.8e-17 90.9 77 55.8
BcaC06g33435 Brassica carinata HOM05D000536 ORTHO05D004254 7.6e-17 90.5 99 52.5
BolC7t45279H Brassica oleracea HOM05D000536 ORTHO05D004254 7.6e-17 90.5 99 52.5
BraA03t14048Z Brassica rapa HOM05D000536 ORTHO05D004254 7.6e-17 90.5 99 52.5
Oeu063361.1 Olea europaea HOM05D000536 ORTHO05D004254 7.6e-17 90.5 64 68.8
ATR0796G105 Amborella trichopoda HOM05D000536 ORTHO05D004254 1.0e-16 90.1 94 53.2
BcaC06g32975 Brassica carinata HOM05D000536 ORTHO05D004254 1.0e-16 90.1 99 52.5
C07p47520 Brassica napus HOM05D000536 ORTHO05D004254 1.0e-16 90.1 99 52.5
Zm00001eb127760 Zea mays HOM05D000536 ORTHO05D004254 1.0e-16 90.1 105 47.6
Sed0020505 Sechium edule HOM05D000536 ORTHO05D004254 1.3e-16 89.7 64 68.8
BraA08t33197Z Brassica rapa HOM05D000536 ORTHO05D004254 1.7e-16 89.4 100 51.0
SalBow2G2779 Salvia bowleyana HOM05D000536 ORTHO05D004254 1.7e-16 89.4 64 70.3
BcaC07g37939 Brassica carinata HOM05D000536 ORTHO05D004254 2.2e-16 89.0 101 51.5
BolC8t48323H Brassica oleracea HOM05D000536 ORTHO05D004254 2.2e-16 89.0 101 51.5
Sp7g14380 Schrenkiella parvula HOM05D000536 ORTHO05D004254 2.2e-16 89.0 101 51.5
Solyc01g066590.3 Solanum lycopersicum HOM05D000536 ORTHO05D004254 2.2e-16 89.0 97 56.7
PGSC0003DMG400011331 Solanum tuberosum HOM05D000536 ORTHO05D004254 2.9e-16 88.6 97 56.7
SGA_v2.0_scaffold67G22610 Striga asiatica HOM05D000536 ORTHO05D004254 2.9e-16 88.6 99 50.5
unitig_32.g10640 Utricularia gibba HOM05D000536 ORTHO05D004254 2.9e-16 88.6 98 52.0
A03p49470 Brassica napus HOM05D000536 ORTHO05D004254 3.8e-16 88.2 99 51.5
A08p12060 Brassica napus HOM05D000536 ORTHO05D004254 3.8e-16 88.2 102 51.0
HPP92_013727 Vanilla planifolia HOM05D000536 ORTHO05D004254 3.8e-16 88.2 64 65.6
MSTRG.10107 Avicennia marina HOM05D000536 ORTHO05D004254 4.9e-16 87.8 64 68.8
ECA240G3254 Erigeron canadensis HOM05D000536 ORTHO05D004254 4.9e-16 87.8 96 52.1
Lalb_Chr07g0177841 Lupinus albus HOM05D000536 ORTHO05D004254 4.9e-16 87.8 101 51.5
Nitab4.5_0001233g0030 Nicotiana tabacum HOM05D000536 ORTHO05D004254 4.9e-16 87.8 64 70.3
Lsat_1_v5_gn_6_96361 Lactuca sativa HOM05D000536 ORTHO05D004254 6.5e-16 87.4 103 48.5
Sed0015469 Sechium edule HOM05D000536 ORTHO05D004254 6.5e-16 87.4 64 65.6
HanXRQChr17g0536091 Helianthus annuus HOM05D000536 ORTHO05D004254 8.4e-16 87.0 80 58.8
Os01g0256400 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D004254 1.1e-15 86.7 63 63.5
THA.LOC104802579 Tarenaya hassleriana HOM05D000536 ORTHO05D004254 1.1e-15 86.7 110 50.0
vmacro14178 Vaccinium macrocarpon HOM05D000536 ORTHO05D004254 1.1e-15 86.7 81 59.3
Zm00001eb333540 Zea mays HOM05D000536 ORTHO05D004254 1.1e-15 86.7 102 47.1
Dinv44359 Davidia involucrata HOM05D000536 ORTHO05D004254 1.9e-15 85.9 55 74.5
Sopen01g028140 Solanum pennellii HOM05D000536 ORTHO05D004254 2.5e-15 85.5 97 55.7
SGA_v2.0_scaffold18G08347 Striga asiatica HOM05D000536 ORTHO05D004254 2.5e-15 85.5 63 66.7
DCAR_023293 Daucus carota HOM05D000536 ORTHO05D004254 4.2e-15 84.7 75 58.7
unitig_88.g27712 Utricularia gibba HOM05D000536 ORTHO05D004254 5.5e-15 84.3 96 51.0
Haze_01173 Corylus avellana HOM05D000536 ORTHO05D004254 7.1e-15 84.0 96 52.1
Nitab4.5_0004498g0040 Nicotiana tabacum HOM05D000536 ORTHO05D004254 7.1e-15 84.0 64 67.2
Gohir.A09G136400 Gossypium hirsutum HOM05D001522 ORTHO05D004254 1.6e-14 82.8 44 88.6
HanXRQChr13g0418081 Helianthus annuus HOM05D000536 ORTHO05D004254 2.1e-14 82.4 64 62.5
HanXRQChr13g0419261 Helianthus annuus HOM05D000536 ORTHO05D004254 2.1e-14 82.4 64 62.5
Peaxi162Scf00065g01531 Petunia axillaris HOM05D000536 ORTHO05D004254 2.1e-14 82.4 90 58.9
PRCOL_00005070 Prasinoderma coloniale HOM05D000536 ORTHO05D004254 2.7e-14 82.0 64 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4107 Anthoceros agrestis HOM05D000536 ORTHO05D004254 3.5e-14 81.6 64 60.9
Mapoly0084s0084 Marchantia polymorpha HOM05D000536 ORTHO05D004254 3.5e-14 81.6 64 60.9
Pp3c23_21620 Physcomitrium patens HOM05D000536 ORTHO05D004254 3.5e-14 81.6 64 60.9
Pp3c20_3493 Physcomitrium patens HOM05D000536 ORTHO05D004254 4.6e-14 81.3 64 59.4
Cre03.g181150 Chlamydomonas reinhardtii HOM05D000536 ORTHO05D004254 6.0e-14 80.9 63 58.7
MCO01G119 Micromonas commoda HOM05D000536 ORTHO05D004254 6.0e-14 80.9 64 57.8
Gohir.D09G238800 Gossypium hirsutum HOM05D000536 ORTHO05D004254 7.9e-14 80.5 55 69.1
SMO365G0002 Selaginella moellendorffii HOM05D000536 ORTHO05D004254 7.9e-14 80.5 64 59.4
CDE08G0553 Ceratophyllum demersum HOM05D000536 ORTHO05D004254 1.8e-13 79.3 55 70.9
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 6.7e-13 77.4 98 45.9
CAN.G129.32 Capsicum annuum HOM05D000536 ORTHO05D004254 8.7e-13 77.0 55 69.1
MBI18_g25343_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D004254 8.7e-13 77.0 55 67.3
MBI19_g34789_MAGBIO Magnolia biondii HOM05D000536 ORTHO05D004254 1.5e-12 76.3 55 67.3
SEGI_03964 Sequoiadendron giganteum HOM05D000536 ORTHO05D004254 1.9e-12 75.9 59 61.0
Os06g0492700 Oryza sativa ssp. japonica HOM05D000536 ORTHO05D004254 3.3e-12 75.1 70 58.6
GSVIVG01035125001 Vitis vinifera HOM05D000536 ORTHO05D004254 2.8e-11 72.0 51 66.7
vmacro08175 Vaccinium macrocarpon HOM05D000536 ORTHO05D004254 3.7e-11 71.6 54 61.1
CBR_g55380 Chara braunii HOM05D000536 ORTHO05D004254 1.2e-09 66.6 40 67.5
Ca_01965_v3 Cicer arietinum L. HOM05D000536 ORTHO05D004254 2.0e-09 65.9 72 48.6
Ca_01918_v3 Cicer arietinum L. HOM05D000536 ORTHO05D004254 1.3e-08 63.2 64 51.6
vmacro03194 Vaccinium macrocarpon HOM05D000154 ORTHO05D004254 2.9e-08 62.0 40 67.5
TPR.G32879 Trifolium pratense HOM05D000536 ORTHO05D004254 3.6e-06 55.1 62 43.5


User provided reference genes

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