Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 5.0e-46 187.6 105 100.0
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 1.2e-44 183.0 105 98.1
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 4.7e-28 127.9 85 88.2
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.4e-27 126.3 85 88.2
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 1.4e-27 126.3 85 88.2
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 5.3e-24 114.4 76 85.5
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 1.6e-23 112.8 67 98.5
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 5.9e-23 110.9 67 97.0
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 3.8e-22 108.2 74 83.8
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 6.5e-22 107.5 85 75.3
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 6.3e-17 90.9 77 68.8
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 1.4e-16 89.7 74 68.9
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 9.1e-16 87.0 86 59.3
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 2.0e-15 85.9 77 63.6
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 1.0e-14 83.6 82 64.6
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 2.2e-14 82.4 86 57.0
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 3.8e-14 81.6 85 57.6
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 8.5e-14 80.5 82 57.3
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 2.5e-13 79.0 74 60.8
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 4.2e-13 78.2 86 54.7
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 5.5e-13 77.8 77 59.7
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 5.5e-13 77.8 77 58.4
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 7.2e-13 77.4 74 60.8
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 7.2e-13 77.4 75 62.7
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.6e-12 76.3 88 54.5
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.6e-12 76.3 88 54.5
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 2.7e-12 75.5 77 59.7
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 2.7e-12 75.5 74 59.5
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 2.7e-12 75.5 83 53.0
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 3.6e-12 75.1 76 60.5
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 4.7e-12 74.7 74 62.2
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 4.7e-12 74.7 72 58.3
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 6.1e-12 74.3 77 54.5
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 6.1e-12 74.3 85 56.5
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 8.0e-12 73.9 79 57.0
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 1.8e-11 72.8 77 53.2
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 1.8e-11 72.8 77 53.2
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 1.8e-11 72.8 77 53.2
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.8e-11 72.8 77 54.5
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 1.8e-11 72.8 86 55.8
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 3.0e-11 72.0 77 55.8
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 3.0e-11 72.0 88 51.1
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.0e-11 72.0 85 50.6
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.0e-11 72.0 77 54.5
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 4.0e-11 71.6 77 53.2
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 4.0e-11 71.6 86 52.3
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 5.2e-11 71.2 86 51.2
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 6.8e-11 70.9 72 59.7
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 8.8e-11 70.5 64 62.5
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 8.8e-11 70.5 77 50.6
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.2e-10 70.1 85 54.1
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.2e-10 70.1 85 50.6
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 1.5e-10 69.7 49 81.6
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 2.0e-10 69.3 75 56.0
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.0e-10 69.3 77 55.8
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 2.0e-10 69.3 75 52.0
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 2.6e-10 68.9 52 73.1
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 4.4e-10 68.2 63 63.5
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 5.7e-10 67.8 64 60.9
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 5.7e-10 67.8 64 60.9
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 5.7e-10 67.8 64 60.9
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 5.7e-10 67.8 54 68.5
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 5.7e-10 67.8 59 67.8
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 5.7e-10 67.8 86 51.2
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 5.7e-10 67.8 74 55.4
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 7.5e-10 67.4 85 50.6
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 9.8e-10 67.0 61 68.9
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 1.3e-09 66.6 73 53.4
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.7e-09 66.2 72 56.9
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.7e-09 66.2 85 52.9
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 2.2e-09 65.9 60 65.0
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 2.8e-09 65.5 74 52.7
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 4.9e-09 64.7 56 67.9
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 6.3e-09 64.3 74 55.4
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 6.3e-09 64.3 74 52.7
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 8.3e-09 63.9 79 48.1
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 2.4e-08 62.4 74 50.0
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 3.1e-08 62.0 56 64.3
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 3.1e-08 62.0 74 47.3
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 5.4e-08 61.2 77 44.2
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 2.7e-07 58.9 74 52.7
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 3.5e-07 58.5 56 58.9
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 5.9e-07 57.8 45 68.9
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 1.3e-06 56.6 75 45.3
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 2.3e-06 55.8 77 49.4
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 2.3e-06 55.8 88 39.8


User provided reference genes

Program Settings