Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.4e-116 422.9 206 100.0
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.9e-103 378.3 227 84.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.3e-102 374.8 227 83.3
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 9.6e-102 373.6 227 82.8
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 4.0e-92 341.7 230 75.2
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 9.0e-92 340.5 224 75.9
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.4e-90 334.3 227 75.8
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.0e-87 325.5 244 70.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-86 323.6 157 98.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.1e-84 317.0 229 69.0
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.1e-84 317.0 229 69.0
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.4e-84 315.8 226 71.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.3e-82 310.1 226 70.4
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.8e-82 308.5 229 68.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 3.8e-82 308.5 229 68.1
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.9e-81 306.2 216 72.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.2e-81 305.1 226 67.7
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 4.2e-81 305.1 229 66.4
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.5e-81 304.7 227 66.1
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 7.1e-81 304.3 229 67.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.6e-80 303.1 227 67.8
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.6e-80 303.1 216 71.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.1e-80 302.8 229 67.2
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 2.7e-80 302.4 227 69.6
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.7e-80 302.4 225 68.4
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.5e-80 302.0 229 65.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.5e-80 302.0 229 65.9
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.5e-80 302.0 227 67.8
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 3.5e-80 302.0 229 66.4
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 7.9e-80 300.8 229 65.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.3e-79 300.1 229 65.9
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.3e-79 299.3 227 67.8
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.1e-79 298.1 216 69.9
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 5.1e-79 298.1 225 65.8
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 6.7e-79 297.7 227 67.4
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.7e-79 297.7 227 67.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.5e-78 296.6 219 69.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.9e-78 296.2 219 69.4
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-78 295.8 219 69.9
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 3.3e-78 295.4 217 69.6
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 7.4e-78 294.3 226 67.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 7.4e-78 294.3 227 67.0
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 9.7e-78 293.9 219 68.9
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.3e-77 293.5 219 68.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.3e-77 291.2 227 66.5
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 8.2e-77 290.8 248 62.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.1e-76 290.4 230 65.7
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.4e-76 290.0 227 65.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.4e-76 290.0 219 68.9
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.8e-76 289.7 232 65.5
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.1e-76 288.9 218 67.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.2e-75 287.0 226 64.6
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.5e-75 286.6 213 68.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.9e-75 284.6 217 67.3
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 7.6e-75 284.3 219 68.9
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 7.6e-75 284.3 219 68.9
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.0e-74 283.9 229 64.2
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.7e-74 283.1 231 64.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.7e-74 283.1 223 66.4
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 1.7e-74 283.1 230 64.3
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 2.2e-74 282.7 225 64.9
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.9e-74 282.3 234 64.1
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.9e-74 282.3 223 66.4
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 3.8e-74 282.0 225 65.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 5.0e-74 281.6 227 63.9
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 5.0e-74 281.6 227 64.3
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 8.5e-74 280.8 213 67.6
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.4e-73 280.0 229 63.3
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.5e-73 279.3 227 61.7
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-73 279.3 234 63.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 3.2e-73 278.9 230 63.0
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 4.2e-73 278.5 214 66.8
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 7.2e-73 277.7 213 67.1
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 7.2e-73 277.7 223 65.5
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 4.6e-72 275.0 225 64.9
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 7.9e-72 274.2 233 60.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.0e-71 273.9 222 66.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.3e-71 273.5 234 63.2
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.8e-71 273.1 228 61.8
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.3e-71 272.7 229 62.4
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 3.9e-71 271.9 219 66.7
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 3.9e-71 271.9 226 61.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 5.1e-71 271.6 228 61.8
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 6.7e-71 271.2 228 61.4
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 6.7e-71 271.2 230 61.7
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.9e-70 269.6 214 64.5
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.9e-70 269.6 228 61.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.9e-70 269.6 226 62.4
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 3.3e-70 268.9 226 61.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 3.3e-70 268.9 217 63.6
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.3e-70 268.9 217 63.6
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 5.7e-70 268.1 214 64.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 5.7e-70 268.1 231 61.5
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 7.4e-70 267.7 234 60.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 9.7e-70 267.3 220 62.3
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 9.7e-70 267.3 233 60.5
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.3e-69 266.9 233 59.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.6e-69 266.5 217 62.2
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.2e-69 266.2 227 62.1
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 2.8e-69 265.8 211 64.0
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.8e-69 265.8 234 59.4
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 4.8e-69 265.0 212 62.7
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-68 263.8 214 63.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-68 263.8 214 63.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-68 263.5 230 59.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.8e-68 263.1 223 61.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.4e-68 262.7 230 59.1
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.4e-68 262.7 214 63.1
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 4.1e-68 261.9 229 61.1
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 4.1e-68 261.9 229 61.1
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 4.1e-68 261.9 229 59.8
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 4.5e-67 258.5 210 62.9
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 5.9e-67 258.1 227 61.2
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.8e-66 255.4 227 59.9
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 8.5e-66 254.2 234 60.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.1e-65 253.8 238 58.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.1e-65 253.8 236 58.1
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.6e-64 248.4 226 58.8
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.4e-63 246.9 231 57.6
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.4e-63 246.9 233 57.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.5e-62 243.4 168 72.0
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.4e-60 236.9 195 63.1
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 6.9e-60 234.6 158 71.5
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 9.1e-60 234.2 226 55.8
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.0e-58 230.7 232 55.6
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.4e-57 226.9 163 66.9
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.4e-57 226.9 217 55.3
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-56 223.8 166 69.3
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.6e-56 223.4 161 68.9
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.7e-56 222.6 178 65.2
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.0e-55 220.7 184 62.5
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 8.8e-55 217.6 246 49.2
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.8e-53 212.6 235 54.0
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 4.5e-51 205.3 215 53.5
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.0e-50 204.1 215 48.4
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.2e-49 199.1 184 58.2
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.6e-43 180.3 119 70.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 2.8e-37 159.5 213 42.7
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.1e-36 157.5 224 42.4
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.4e-36 156.4 135 63.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 7.7e-35 151.4 213 46.0
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.8e-34 149.1 213 45.5
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 8.6e-34 147.9 204 46.1
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.4e-31 140.6 152 50.0
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.5e-30 137.1 113 57.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.7e-30 135.2 163 49.1
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.1e-28 129.0 208 40.4
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.7e-27 126.3 205 40.0
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.2e-24 117.5 102 59.8
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 4.7e-24 115.5 139 48.9
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.8e-23 113.6 75 69.3
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 7.5e-22 108.2 88 61.4
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.6e-18 94.7 66 71.2
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.1e-17 94.4 95 53.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 7.3e-17 91.7 122 43.4
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 4.4e-14 82.4 202 30.7
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.9e-13 79.7 72 63.9
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 6.0e-11 72.0 133 35.3
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 7.3e-09 65.1 47 68.1
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.1e-08 63.5 51 64.7
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 8.1e-08 61.6 46 71.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.1e-08 61.6 51 66.7
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.3e-07 60.1 144 31.9
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.1e-07 59.7 38 78.9
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-07 59.7 38 78.9
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-07 59.7 38 78.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.0e-07 59.3 45 71.1
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 7.5e-06 55.1 47 63.8


User provided reference genes

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