Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G388600 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.0e-30 136.0 64 100.0
Gohir.A04G030100 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.8e-30 135.2 64 98.4
Gohir.D05G356700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.0e-30 134.0 64 98.4
Gorai.009G388900 Gossypium raimondii HOM05D006733 ORTHO05D008406 4.0e-30 134.0 64 98.4
Gohir.D05G356200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.0e-29 131.7 64 98.4
Gohir.D05G356800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 1.3e-28 129.0 64 93.8
Gorai.009G389000 Gossypium raimondii HOM05D006733 ORTHO05D008406 1.3e-28 129.0 64 93.8
Gohir.A04G030300 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.4e-27 124.8 64 89.1
Gorai.009G388200 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.4e-27 124.8 64 89.1
Gorai.009G388700 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.4e-27 124.8 64 93.8
Gohir.D05G355800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 9.2e-27 122.9 64 87.5
Duzib170G0030 Durio zibethinus HOM05D006733 ORTHO05D008406 2.7e-26 121.3 64 84.4
Duzib170G0610 Durio zibethinus HOM05D006733 ORTHO05D008406 7.7e-26 119.8 64 84.4
COL.COLO4_27167 Corchorus olitorius HOM05D006733 ORTHO05D008406 6.6e-25 116.7 65 81.5
Thecc.07G089300 Theobroma cacao HOM05D006733 ORTHO05D008406 4.3e-24 114.0 61 83.6
Duzib213G0299 Durio zibethinus HOM05D006733 ORTHO05D008406 3.4e-21 104.4 64 81.2
CiPaw.11G169300 Carya illinoinensis HOM05D006733 ORTHO05D008406 4.4e-21 104.0 64 78.1
Gohir.D01G050200 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.2e-20 101.7 63 79.4
Gorai.002G070100 Gossypium raimondii HOM05D006733 ORTHO05D008406 2.2e-20 101.7 63 79.4
QL08p021800 Quercus lobata HOM05D006733 ORTHO05D008406 2.2e-20 101.7 65 73.8
Haze_09425 Corylus avellana HOM05D006733 ORTHO05D008406 4.9e-20 100.5 65 73.8
Gohir.A11G284800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 4.9e-20 100.5 62 71.0
Eucgr.F01127 Eucalyptus grandis HOM05D006733 ORTHO05D008406 1.1e-19 99.4 66 71.2
Oeu024912.1 Olea europaea HOM05D006733 ORTHO05D008406 2.4e-19 98.2 69 71.0
DCAR_013104 Daucus carota HOM05D006733 ORTHO05D008406 4.1e-19 97.4 68 69.1
Gohir.D11G297700 Gossypium hirsutum HOM05D006733 ORTHO05D008406 7.0e-19 96.7 63 68.3
Gorai.007G322600 Gossypium raimondii HOM05D006733 ORTHO05D008406 7.0e-19 96.7 63 68.3
PGR083G2703 Punica granatum HOM05D006733 ORTHO05D008406 7.0e-19 96.7 65 72.3
Cfa020588 Carpinus fangiana HOM05D006733 ORTHO05D008406 1.6e-18 95.5 65 70.8
vmacro11863 Vaccinium macrocarpon HOM05D006733 ORTHO05D008406 1.6e-18 95.5 62 75.8
PGR031G3292 Punica granatum HOM05D006733 ORTHO05D008406 2.0e-18 95.1 61 75.4
CiPaw.12G118000 Carya illinoinensis HOM05D006733 ORTHO05D008406 5.9e-18 93.6 66 69.7
Oeu037948.1 Olea europaea HOM05D006733 ORTHO05D008406 5.9e-18 93.6 67 70.1
Nitab4.5_0000332g0130 Nicotiana tabacum HOM05D006733 ORTHO05D008406 7.8e-18 93.2 65 69.2
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 7.8e-18 93.2 56 78.6
Aqoxy4G00811 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.0e-17 92.8 67 62.7
Hund02223 Selenicereus undatus HOM05D006733 ORTHO05D008406 1.3e-17 92.4 62 67.7
Gohir.A04G029916 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.3e-17 91.7 47 91.5
TWI39G1253 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 3.0e-17 91.3 64 67.2
GSVIVG01014340001 Vitis vinifera HOM05D006733 ORTHO05D008406 3.0e-17 91.3 61 67.2
Atru.chr2.2618 Acer truncatum HOM05D006733 ORTHO05D008406 3.9e-17 90.9 68 64.7
Atru.chr2.2701 Acer truncatum HOM05D006733 ORTHO05D008406 3.9e-17 90.9 68 64.7
Actinidia12807 Actinidia chinensis HOM05D006733 ORTHO05D008406 3.9e-17 90.9 62 69.4
Hma1.2p1_0885F.1_g232600 Hydrangea macrophylla HOM05D006733 ORTHO05D008406 3.9e-17 90.9 65 64.6
Atru.chr2.2702 Acer truncatum HOM05D006733 ORTHO05D008406 5.0e-17 90.5 68 66.2
MD11G1246800 Malus domestica HOM05D006733 ORTHO05D008406 5.0e-17 90.5 65 66.2
RcHm_v2.0_Chr5g0033741 Rosa chinensis HOM05D006733 ORTHO05D008406 6.6e-17 90.1 62 71.0
SalBow7G1032 Salvia bowleyana HOM05D006733 ORTHO05D008406 8.6e-17 89.7 61 68.9
Nitab4.5_0005764g0010 Nicotiana tabacum HOM05D006733 ORTHO05D008406 1.1e-16 89.4 65 66.2
Sc16g0006980 Simmondsia chinensis HOM05D006733 ORTHO05D008406 1.9e-16 88.6 64 62.5
TWI38G1652 Tripterygium wilfordii HOM05D006733 ORTHO05D008406 3.3e-16 87.8 65 63.1
Atru.chr2.2617 Acer truncatum HOM05D006733 ORTHO05D008406 4.3e-16 87.4 65 66.2
FAN16G0436 Fragaria x ananassa HOM05D006733 ORTHO05D008406 4.3e-16 87.4 62 69.4
arahy.Tifrunner.gnm1.ann1.XP1NDF Arachis hypogaea HOM05D006733 ORTHO05D008406 7.3e-16 86.7 65 66.2
Sc03g0009960 Simmondsia chinensis HOM05D006733 ORTHO05D008406 7.3e-16 86.7 67 59.7
Glyma.06G242900 Glycine max HOM05D006733 ORTHO05D008406 9.5e-16 86.3 64 64.1
Cc05_g12060 Coffea canephora HOM05D006733 ORTHO05D008406 1.2e-15 85.9 63 60.3
FvH4_3g20030 Fragaria vesca HOM05D006733 ORTHO05D008406 1.6e-15 85.5 62 67.7
FAN11G2570 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.6e-15 85.5 62 67.7
FAN21G3200 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.6e-15 85.5 62 67.7
FAN25G0136 Fragaria x ananassa HOM05D006733 ORTHO05D008406 1.6e-15 85.5 62 67.7
SalBow7G4025 Salvia bowleyana HOM05D006733 ORTHO05D008406 2.8e-15 84.7 61 65.6
MD03G1227300 Malus domestica HOM05D006733 ORTHO05D008406 4.7e-15 84.0 65 61.5
MD03G1227500 Malus domestica HOM05D006733 ORTHO05D008406 4.7e-15 84.0 65 61.5
Glyma.12G154300 Glycine max HOM05D006733 ORTHO05D008406 6.2e-15 83.6 64 62.5
Os01g0200700 Oryza sativa ssp. japonica HOM05D006733 ORTHO05D008406 1.0e-14 82.8 64 62.5
Aa31LG8G2570 Aethionema arabicum HOM05D006733 ORTHO05D008406 3.1e-14 81.3 60 63.3
Lj3g0014029 Lotus japonicus HOM05D006733 ORTHO05D008406 3.1e-14 81.3 65 60.0
Migut.M00808 Erythranthe guttata HOM05D006733 ORTHO05D008406 4.0e-14 80.9 63 66.7
MBI06_g04174_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 4.0e-14 80.9 63 63.5
BolC3t17038H Brassica oleracea HOM05D006733 ORTHO05D008406 1.2e-13 79.3 64 57.8
Lalb_Chr01g0006561 Lupinus albus HOM05D006733 ORTHO05D008406 1.2e-13 79.3 64 57.8
Hund22902 Selenicereus undatus HOM05D006733 ORTHO05D008406 2.0e-13 78.6 64 62.5
BcaC01g03880 Brassica carinata HOM05D006733 ORTHO05D008406 2.6e-13 78.2 64 56.2
C03p47630 Brassica napus HOM05D006733 ORTHO05D008406 2.6e-13 78.2 64 56.2
Manes.15G086700 Manihot esculenta HOM05D006733 ORTHO05D008406 3.4e-13 77.8 65 60.0
Medtr8g060850 Medicago truncatula HOM05D006733 ORTHO05D008406 3.4e-13 77.8 64 59.4
Nn1g04086 Nelumbo nucifera HOM05D006733 ORTHO05D008406 3.4e-13 77.8 64 62.5
Prupe.4G181500 Prunus persica HOM05D006733 ORTHO05D008406 3.4e-13 77.8 65 55.4
arahy.Tifrunner.gnm1.ann1.KTTP1X Arachis hypogaea HOM05D006733 ORTHO05D008406 5.8e-13 77.0 58 69.0
Ca_24272_v3 Cicer arietinum L. HOM05D006733 ORTHO05D008406 7.5e-13 76.6 64 54.7
arahy.Tifrunner.gnm1.ann1.W6Q2IR Arachis hypogaea HOM05D006733 ORTHO05D008406 9.8e-13 76.3 58 69.0
Aqoxy4G00809 Aquilegia oxysepala HOM05D006733 ORTHO05D008406 1.3e-12 75.9 65 56.9
CARHR090380 Cardamine hirsuta HOM05D006733 ORTHO05D008406 2.2e-12 75.1 66 56.1
A05p34080 Brassica napus HOM05D006733 ORTHO05D008406 2.9e-12 74.7 61 55.7
BraA05t22229Z Brassica rapa HOM05D006733 ORTHO05D008406 2.9e-12 74.7 61 55.7
Manes.03G110500 Manihot esculenta HOM05D006733 ORTHO05D008406 2.9e-12 74.7 53 69.8
Carub.0003s1505 Capsella rubella HOM05D006733 ORTHO05D008406 3.7e-12 74.3 66 54.5
Thhalv10021853m.g Eutrema salsugineum HOM05D006733 ORTHO05D008406 4.9e-12 73.9 66 56.1
BcaC05g28981 Brassica carinata HOM05D006733 ORTHO05D008406 6.4e-12 73.6 61 55.7
BolC5t33870H Brassica oleracea HOM05D006733 ORTHO05D008406 6.4e-12 73.6 61 55.7
CAN.G739.12 Capsicum annuum HOM05D006733 ORTHO05D008406 6.4e-12 73.6 63 61.9
PSO541G4814 Papaver somniferum HOM05D006733 ORTHO05D008406 1.4e-11 72.4 60 60.0
PGSC0003DMG400015318 Solanum tuberosum HOM05D006733 ORTHO05D008406 1.4e-11 72.4 61 55.7
DCAR_019551 Daucus carota HOM05D006733 ORTHO05D008406 1.9e-11 72.0 64 54.7
DCAR_020986 Daucus carota HOM05D006733 ORTHO05D008406 2.4e-11 71.6 67 59.7
Potri.001G400100 Populus trichocarpa HOM05D006733 ORTHO05D008406 3.2e-11 71.2 65 55.4
BcaB06g29562 Brassica carinata HOM05D006733 ORTHO05D008406 7.0e-11 70.1 61 54.1
HPP92_020054 Vanilla planifolia HOM05D006733 ORTHO05D008406 7.0e-11 70.1 56 58.9
Rhsim06G0198600 Rhododendron simsii HOM05D006733 ORTHO05D008406 1.2e-10 69.3 45 73.3
EL10Ac4g08173 Beta vulgaris HOM05D006733 ORTHO05D008406 3.5e-10 67.8 67 50.7
Sed0028027 Sechium edule HOM05D006733 ORTHO05D008406 4.6e-10 67.4 64 54.7
Nn1g04087 Nelumbo nucifera HOM05D006733 ORTHO05D008406 1.1e-08 62.8 61 60.7
MBI07_g30176_MAGBIO Magnolia biondii HOM05D006733 ORTHO05D008406 1.5e-08 62.4 61 59.0
Potri.011G118900 Populus trichocarpa HOM05D006733 ORTHO05D008406 2.5e-08 61.6 65 52.3
ClCG10G006940 Citrullus lanatus HOM05D006733 ORTHO05D008406 3.3e-08 61.2 49 61.2
ATR0737G148 Amborella trichopoda HOM05D006733 ORTHO05D008406 1.2e-07 59.3 49 61.2
Gohir.A01G063800 Gossypium hirsutum HOM05D006733 ORTHO05D008406 2.8e-07 58.2 36 77.8
Oeu060552.1 Olea europaea HOM05D006733 ORTHO05D008406 8.9e-06 53.1 44 61.4


User provided reference genes

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