Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D05G342900 Gossypium hirsutum HOM05D004386 ORTHO05D005247 1.5e-46 189.1 92 100.0
Gorai.009G369500 Gossypium raimondii HOM05D004386 ORTHO05D005247 1.5e-46 189.1 92 100.0
Gorai.009G369300 Gossypium raimondii HOM05D004386 ORTHO05D005247 2.6e-35 151.8 79 93.7
Gohir.D11G070400 Gossypium hirsutum HOM05D004386 ORTHO05D005247 2.2e-29 132.1 76 82.9
Gorai.007G075500 Gossypium raimondii HOM05D004386 ORTHO05D005247 2.2e-29 132.1 76 82.9
Gohir.A11G066200 Gossypium hirsutum HOM05D004386 ORTHO05D005247 8.2e-29 130.2 76 81.6
Gohir.D11G341000 Gossypium hirsutum HOM05D004386 ORTHO05D005247 1.0e-26 123.2 68 86.8
Duzib147G0401 Durio zibethinus HOM05D004386 ORTHO05D005247 6.5e-26 120.6 76 76.3
Thecc.04G016500 Theobroma cacao HOM05D004386 ORTHO05D005247 8.5e-26 120.2 76 75.0
Gohir.A07G222800 Gossypium hirsutum HOM05D004386 ORTHO05D005247 7.5e-22 107.1 73 71.2
Gohir.D07G229500 Gossypium hirsutum HOM05D004386 ORTHO05D005247 7.5e-22 107.1 73 71.2
Gorai.001G264600 Gossypium raimondii HOM05D004386 ORTHO05D005247 7.5e-22 107.1 73 71.2
COL.COLO4_29103 Corchorus olitorius HOM05D004386 ORTHO05D005247 5.9e-19 97.4 76 61.8
Glyma.19G005200 Glycine max HOM05D004386 ORTHO05D005247 9.5e-17 90.1 76 59.2
Atru.chr6.2286 Acer truncatum HOM05D004386 ORTHO05D005247 1.6e-16 89.4 76 60.5
TWI12G1386 Tripterygium wilfordii HOM05D004386 ORTHO05D005247 3.6e-16 88.2 76 55.3
Ca_04168_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 4.7e-16 87.8 79 55.7
CiPaw.03G043200 Carya illinoinensis HOM05D004386 ORTHO05D005247 1.0e-15 86.7 76 55.3
Sabra16G0224400 Salix brachista HOM05D004386 ORTHO05D005247 1.0e-15 86.7 76 55.3
Potri.001G345400 Populus trichocarpa HOM05D004386 ORTHO05D005247 1.4e-15 86.3 76 55.3
Glyma.05G004600 Glycine max HOM05D004386 ORTHO05D005247 1.8e-15 85.9 76 59.2
Manes.15G150000 Manihot esculenta HOM05D004386 ORTHO05D005247 1.8e-15 85.9 76 55.3
MBI16_g23842_MAGBIO Magnolia biondii HOM05D004386 ORTHO05D005247 4.0e-15 84.7 66 60.6
Phvul.007G112800 Phaseolus vulgaris HOM05D004386 ORTHO05D005247 5.2e-15 84.3 76 57.9
Phvul.004G010500 Phaseolus vulgaris HOM05D004386 ORTHO05D005247 1.2e-14 83.2 76 56.6
ClCG10G013910 Citrullus lanatus HOM05D004386 ORTHO05D005247 2.0e-14 82.4 76 53.9
Haze_14735 Corylus avellana HOM05D004386 ORTHO05D005247 2.0e-14 82.4 76 52.6
Cfa007374 Carpinus fangiana HOM05D004386 ORTHO05D005247 7.5e-14 80.5 76 52.6
FAN02G3912 Fragaria x ananassa HOM05D004386 ORTHO05D005247 7.5e-14 80.5 76 47.4
FvH4_6g51280 Fragaria vesca HOM05D004386 ORTHO05D005247 9.8e-14 80.1 76 47.4
Ciclev10014954m.g Citrus clementina HOM05D004386 ORTHO05D005247 1.7e-13 79.3 76 52.6
Thhalv10004025m.g Eutrema salsugineum HOM05D004386 ORTHO05D005247 1.7e-13 79.3 76 55.3
QL02p074814 Quercus lobata HOM05D004386 ORTHO05D005247 1.7e-13 79.3 76 52.6
RcHm_v2.0_Chr2g0172901 Rosa chinensis HOM05D004386 ORTHO05D005247 1.7e-13 79.3 76 47.4
FAN14G1865 Fragaria x ananassa HOM05D004386 ORTHO05D005247 2.8e-13 78.6 76 46.1
PGR083G0256 Punica granatum HOM05D004386 ORTHO05D005247 2.8e-13 78.6 76 52.6
CsaV3_3G042780 Cucumis sativus L. HOM05D004386 ORTHO05D005247 3.7e-13 78.2 76 51.3
Eucgr.J02238 Eucalyptus grandis HOM05D004386 ORTHO05D005247 3.7e-13 78.2 69 58.0
FAN09G3114 Fragaria x ananassa HOM05D004386 ORTHO05D005247 3.7e-13 78.2 76 46.1
Sp2g16770 Schrenkiella parvula HOM05D004386 ORTHO05D005247 3.7e-13 78.2 76 53.9
Sed0006302 Sechium edule HOM05D004386 ORTHO05D005247 3.7e-13 78.2 76 50.0
Manes.17G112600 Manihot esculenta HOM05D004386 ORTHO05D005247 4.9e-13 77.8 76 48.7
Cpa.g.sc108.64 Carica papaya HOM05D004386 ORTHO05D005247 8.3e-13 77.0 76 53.9
THA.LOC104805372 Tarenaya hassleriana HOM05D004386 ORTHO05D005247 8.3e-13 77.0 76 53.9
Nn4g22656 Nelumbo nucifera HOM05D004386 ORTHO05D005247 1.1e-12 76.6 76 51.3
AL5G17060 Arabidopsis lyrata HOM05D004386 ORTHO05D005247 1.4e-12 76.3 76 52.6
AT3G27640 Arabidopsis thaliana HOM05D004386 ORTHO05D005247 1.4e-12 76.3 76 52.6
CANSAT64G0389 Cannabis sativa HOM05D004386 ORTHO05D005247 1.4e-12 76.3 88 44.3
FAN05G0117 Fragaria x ananassa HOM05D004386 ORTHO05D005247 1.4e-12 76.3 76 44.7
Lj2g0022197 Lotus japonicus HOM05D004386 ORTHO05D005247 1.4e-12 76.3 76 50.0
Prupe.3G291000 Prunus persica HOM05D004386 ORTHO05D005247 1.4e-12 76.3 76 48.7
TAR374G1586 Trochodendron aralioides HOM05D004386 ORTHO05D005247 2.4e-12 75.5 80 47.5
Lalb_Chr06g0175761 Lupinus albus HOM05D004386 ORTHO05D005247 3.1e-12 75.1 76 50.0
Carub.0005s0608 Capsella rubella HOM05D004386 ORTHO05D005247 4.1e-12 74.7 76 51.3
Lj7A599T80 Lonicera japonica HOM05D004386 ORTHO05D005247 4.1e-12 74.7 76 47.4
BcaC06g30967 Brassica carinata HOM05D004386 ORTHO05D005247 7.0e-12 73.9 76 50.0
CARHR149060 Cardamine hirsuta HOM05D004386 ORTHO05D005247 7.0e-12 73.9 76 51.3
Medtr6g005220 Medicago truncatula HOM05D004386 ORTHO05D005247 7.0e-12 73.9 76 53.9
TPR.G14088 Trifolium pratense HOM05D004386 ORTHO05D005247 7.0e-12 73.9 79 49.4
Peaxi162Scf00129g01540 Petunia axillaris HOM05D004386 ORTHO05D005247 9.2e-12 73.6 69 49.3
Aa31LG2G5030 Aethionema arabicum HOM05D004386 ORTHO05D005247 1.2e-11 73.2 73 53.4
BcaC06g33792 Brassica carinata HOM05D004386 ORTHO05D005247 1.2e-11 73.2 76 51.3
A06p41010 Brassica napus HOM05D004386 ORTHO05D005247 1.2e-11 73.2 76 51.3
C07p36830 Brassica napus HOM05D004386 ORTHO05D005247 1.2e-11 73.2 76 51.3
BolC7t44196H Brassica oleracea HOM05D004386 ORTHO05D005247 1.2e-11 73.2 76 51.3
BraA06t27020Z Brassica rapa HOM05D004386 ORTHO05D005247 1.2e-11 73.2 76 51.3
BraA09t35984Z Brassica rapa HOM05D004386 ORTHO05D005247 2.0e-11 72.4 76 50.0
MD17G1027700 Malus domestica HOM05D004386 ORTHO05D005247 2.7e-11 72.0 76 46.1
VMungo0464G0678 Vigna mungo HOM05D004386 ORTHO05D005247 2.7e-11 72.0 76 51.3
SHI16383 Sapria himalayana HOM05D004386 ORTHO05D005247 4.5e-11 71.2 62 51.6
Sed0019384 Sechium edule HOM05D004386 ORTHO05D005247 4.5e-11 71.2 76 48.7
A09p03460 Brassica napus HOM05D004386 ORTHO05D005247 5.9e-11 70.9 76 48.7
Psat1g054840 Pisum sativum HOM05D004386 ORTHO05D005247 5.9e-11 70.9 80 48.8
BcaC06g30968 Brassica carinata HOM05D004386 ORTHO05D005247 1.7e-10 69.3 58 60.3
HPP92_006408 Vanilla planifolia HOM05D004386 ORTHO05D005247 1.7e-10 69.3 67 55.2
Dinv33445 Davidia involucrata HOM05D004386 ORTHO05D005247 3.8e-10 68.2 76 46.1
Hma1.2p1_1291F.1_g273490 Hydrangea macrophylla HOM05D004386 ORTHO05D005247 3.8e-10 68.2 76 46.1
MSTRG.24035 Avicennia marina HOM05D004386 ORTHO05D005247 5.0e-10 67.8 67 47.8
ATR0585G118 Amborella trichopoda HOM05D004386 ORTHO05D005247 6.6e-10 67.4 79 41.8
PGSC0003DMG400012630 Solanum tuberosum HOM05D004386 ORTHO05D005247 6.6e-10 67.4 73 45.2
Nitab4.5_0006802g0040 Nicotiana tabacum HOM05D004386 ORTHO05D005247 8.6e-10 67.0 73 43.8
Ca_04167_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 1.1e-09 66.6 73 46.6
Lsat_1_v5_gn_0_39820 Lactuca sativa HOM05D004386 ORTHO05D005247 1.1e-09 66.6 76 43.4
MD09G1027800 Malus domestica HOM05D004386 ORTHO05D005247 1.5e-09 66.2 76 42.1
Nitab4.5_0002682g0120 Nicotiana tabacum HOM05D004386 ORTHO05D005247 1.5e-09 66.2 73 42.5
DCAR_001447 Daucus carota HOM05D004386 ORTHO05D005247 3.3e-09 65.1 67 46.3
PSO063G4583 Papaver somniferum HOM05D004386 ORTHO05D005247 4.3e-09 64.7 76 46.1
PSO832G3302 Papaver somniferum HOM05D004386 ORTHO05D005247 4.3e-09 64.7 76 46.1
CSS0036222 Camellia sinensis var. sinensis HOM05D004386 ORTHO05D005247 5.6e-09 64.3 76 46.1
GSVIVG01032413001 Vitis vinifera HOM05D004386 ORTHO05D005247 5.6e-09 64.3 76 48.7
CSS0006108 Camellia sinensis var. sinensis HOM05D004386 ORTHO05D005247 7.3e-09 63.9 76 46.1
Cc07_g01760 Coffea canephora HOM05D004386 ORTHO05D005247 7.3e-09 63.9 76 44.7
Sopen02g031190 Solanum pennellii HOM05D004386 ORTHO05D005247 7.3e-09 63.9 73 43.8
Aqoxy5G03803 Aquilegia oxysepala HOM05D004386 ORTHO05D005247 2.8e-08 62.0 76 46.1
HanXRQChr15g0475331 Helianthus annuus HOM05D004386 ORTHO05D005247 3.6e-08 61.6 87 37.9
Solyc02g086470.3 Solanum lycopersicum HOM05D004386 ORTHO05D005247 4.7e-08 61.2 73 41.1
unitig_60.g25509 Utricularia gibba HOM05D004386 ORTHO05D005247 8.0e-08 60.5 67 46.3
MELO3C026578.2 Cucumis melo HOM05D004386 ORTHO05D005247 1.0e-07 60.1 44 56.8
Nitab4.5_0007892g0010 Nicotiana tabacum HOM05D004386 ORTHO05D005247 1.4e-07 59.7 76 43.4
AUR62020360 Chenopodium quinoa HOM05D004386 ORTHO05D005247 1.8e-07 59.3 70 45.7
HanXRQChr17g0548511 Helianthus annuus HOM05D004386 ORTHO05D005247 2.3e-07 58.9 77 39.0
SalBow1G5144 Salvia bowleyana HOM05D004386 ORTHO05D005247 2.3e-07 58.9 68 48.5
Actinidia06000 Actinidia chinensis HOM05D004386 ORTHO05D005247 4.0e-07 58.2 77 42.9
AUR62015863 Chenopodium quinoa HOM05D004386 ORTHO05D005247 4.0e-07 58.2 70 45.7
Hund23207 Selenicereus undatus HOM05D004386 ORTHO05D005247 5.2e-07 57.8 87 35.6
Zm00001eb053910 Zea mays HOM05D004386 ORTHO05D005247 5.2e-07 57.8 77 40.3
DCAR_021718 Daucus carota HOM05D004386 ORTHO05D005247 6.8e-07 57.4 76 39.5
Migut.H00080 Erythranthe guttata HOM05D004386 ORTHO05D005247 8.9e-07 57.0 65 43.1
CDE06G2157 Ceratophyllum demersum HOM05D004386 ORTHO05D005247 1.2e-06 56.6 63 46.0
Zm00001eb216890 Zea mays HOM05D004386 ORTHO05D005247 2.0e-06 55.8 79 38.0
SEGI_08021 Sequoiadendron giganteum HOM05D004386 ORTHO05D005247 2.6e-06 55.5 69 36.2
Oeu057061.2 Olea europaea HOM05D004386 ORTHO05D005247 5.7e-06 54.3 67 46.3


User provided reference genes

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