Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 3.9e-199 698.0 366 100.0
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.5e-193 679.5 366 98.1
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 4.8e-181 637.9 366 92.9
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 4.9e-149 531.6 369 77.0
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 4.0e-143 511.9 367 74.9
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 5.3e-127 458.4 367 66.5
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.8e-125 452.2 364 65.1
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 8.4e-125 451.1 363 65.6
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.2e-123 447.2 363 65.0
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 6.0e-123 444.9 368 64.4
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 3.0e-122 442.6 364 64.3
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 8.7e-122 441.0 364 64.3
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 7.4e-121 438.0 367 62.7
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 3.6e-120 435.6 371 63.3
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.4e-119 433.0 363 62.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 4.0e-119 432.2 367 62.1
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 6.9e-119 431.4 367 63.2
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 6.9e-119 431.4 367 62.4
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 2.2e-117 426.4 363 61.7
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 6.4e-117 424.9 406 57.4
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 8.4e-117 424.5 366 62.6
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.1e-116 424.1 361 62.0
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.4e-116 423.7 363 61.2
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.6e-115 420.2 285 78.6
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 1.6e-115 420.2 362 62.2
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.7e-115 419.5 363 61.2
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.5e-115 419.1 366 60.4
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 3.5e-115 419.1 362 61.9
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.0e-114 417.5 344 64.2
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.3e-114 417.2 367 62.4
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.3e-114 417.2 367 60.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 1.3e-114 417.2 364 61.0
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.8e-114 416.8 366 60.7
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.3e-114 416.4 364 59.9
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 5.1e-114 415.2 367 61.0
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.1e-114 415.2 367 60.8
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 6.7e-114 414.8 364 62.1
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.7e-114 414.8 367 60.8
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.7e-114 414.8 367 60.8
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 8.7e-114 414.5 363 62.0
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.9e-113 413.3 366 59.8
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 3.3e-113 412.5 363 61.7
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 3.3e-113 412.5 363 62.3
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 4.3e-113 412.1 363 60.9
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.3e-112 410.6 364 61.3
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.7e-112 409.1 429 54.8
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 6.2e-112 408.3 362 60.2
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.2e-112 408.3 367 60.2
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.8e-111 406.8 363 59.5
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 3.4e-110 402.5 364 60.4
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 5.8e-110 401.7 350 62.0
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 5.8e-110 401.7 362 59.1
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 2.9e-109 399.4 362 58.0
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.4e-108 397.1 357 57.7
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.2e-108 395.6 321 65.7
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 5.5e-108 395.2 363 54.8
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.1e-107 393.3 369 59.3
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 7.9e-107 391.3 364 58.2
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 5.1e-106 388.7 364 57.4
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 8.7e-106 387.9 365 56.7
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.1e-105 387.5 368 57.6
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.5e-105 387.1 408 55.4
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.9e-105 386.7 363 57.0
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.5e-105 386.3 348 58.3
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.8e-104 382.9 366 56.6
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.8e-104 382.9 374 56.1
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.8e-103 380.2 362 55.8
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 2.4e-103 379.8 365 56.2
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 2.4e-103 379.8 368 56.2
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 3.1e-103 379.4 368 57.6
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 5.3e-103 378.6 366 56.6
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.0e-102 376.7 366 54.6
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 2.0e-102 376.7 332 61.4
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 1.0e-101 374.4 366 55.2
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.9e-101 372.9 363 55.4
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 5.0e-101 372.1 365 55.3
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.9e-100 370.2 365 56.2
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 4.2e-100 369.0 365 57.0
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 5.5e-100 368.6 367 52.6
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 7.2e-100 368.2 363 54.0
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.2e-99 367.5 368 53.5
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.6e-99 367.1 365 53.2
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 4.6e-99 365.5 365 55.6
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-98 364.4 365 56.2
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.8e-98 363.6 366 52.5
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.3e-97 359.4 365 53.4
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 4.3e-97 359.0 365 52.9
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 7.4e-97 358.2 365 52.9
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 3.7e-96 355.9 305 63.0
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 4.8e-96 355.5 363 53.4
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.8e-95 353.6 368 54.9
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 2.4e-95 353.2 301 61.1
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 4.1e-95 352.4 371 52.3
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 2.6e-94 349.7 368 55.2
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 3.4e-94 349.4 393 49.4
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.7e-93 347.1 363 54.0
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 5.0e-93 345.5 373 51.2
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.4e-92 344.0 364 52.2
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.4e-90 337.4 366 50.0
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.8e-90 337.0 319 56.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.9e-90 335.9 306 59.8
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.2e-88 330.1 362 50.6
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 2.2e-88 330.1 243 72.8
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.1e-87 327.8 358 49.4
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 5.3e-87 325.5 353 49.9
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 9.1e-87 324.7 302 59.6
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 5.5e-84 315.5 309 56.6
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.3e-80 304.3 350 49.4
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 6.3e-80 302.0 366 45.4
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 7.2e-76 288.5 344 48.5
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 6.7e-74 282.0 365 43.6
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.8e-74 281.6 273 57.1
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 9.7e-73 278.1 288 54.2
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 4.8e-72 275.8 372 43.3
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.3e-72 275.4 347 45.8
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.6e-70 270.8 275 58.2
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.3e-69 267.7 348 44.3
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.2e-67 261.2 376 41.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 2.1e-67 260.4 359 41.8
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 8.3e-64 248.4 245 55.9
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.3e-61 241.1 235 56.2
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.6e-59 234.2 238 56.3
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 9.8e-57 224.9 350 40.6
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.3e-56 224.6 248 54.0
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 2.5e-52 210.3 323 37.8
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.6e-49 200.3 240 51.7
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 3.0e-45 186.8 298 40.6
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 8.6e-45 185.3 300 41.0
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.4e-42 177.9 322 36.0
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.7e-37 161.0 191 47.1
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.1e-36 158.3 450 28.9
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.4e-34 151.4 127 60.6
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 8.9e-34 148.7 373 30.8
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 1.1e-31 141.7 125 53.6
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 4.7e-27 126.3 160 50.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.6e-22 109.8 164 36.0
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.6e-14 83.2 56 73.2
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.9e-12 77.8 148 35.1
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 3.3e-12 77.0 57 64.9
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 4.3e-12 76.6 63 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 2.4e-10 70.9 209 30.1


User provided reference genes

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