Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 7.8e-123 443.7 212 100.0
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.9e-122 441.8 212 99.5
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.9e-121 439.1 212 99.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.1e-112 409.1 212 91.5
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.4e-108 396.4 212 88.7
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.9e-105 386.0 213 85.4
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.6e-104 382.9 213 85.9
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 3.6e-104 381.7 213 85.4
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 1.8e-103 379.4 213 84.0
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 2.3e-103 379.0 213 84.0
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 2.3e-103 379.0 213 84.5
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.2e-102 376.7 213 84.0
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.4e-102 375.2 210 84.3
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 7.6e-102 374.0 212 82.1
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.7e-101 372.9 211 83.4
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.7e-101 372.9 213 83.6
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 8.3e-101 370.5 213 82.6
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 8.3e-101 370.5 208 84.1
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.1e-100 370.2 212 80.2
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.1e-100 370.2 213 83.6
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.1e-100 370.2 208 84.6
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.4e-100 369.8 213 83.1
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.9e-100 369.4 211 82.5
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.2e-100 368.6 213 82.6
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 4.1e-100 368.2 214 82.2
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 81.2
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 7.1e-100 367.5 213 82.2
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 7.1e-100 367.5 204 84.8
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 1.2e-99 366.7 208 83.2
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 82.2
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 80.3
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.1e-99 365.9 213 81.7
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 3.5e-99 365.2 213 80.8
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 7.8e-99 364.0 213 81.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 7.8e-99 364.0 212 79.7
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 82.7
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.0e-98 363.6 208 81.7
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.3e-98 363.2 213 80.8
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 82.2
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 80.8
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.7e-98 362.8 213 80.8
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 3.0e-98 362.1 208 82.7
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 3.0e-98 362.1 213 80.8
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 3.0e-98 362.1 209 81.3
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.9e-98 361.7 211 80.1
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 3.9e-98 361.7 213 79.3
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.9e-98 361.7 208 81.7
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 3.9e-98 361.7 208 81.2
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 3.9e-98 361.7 208 81.2
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 3.9e-98 361.7 208 81.2
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 8.6e-98 360.5 208 80.8
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-97 360.1 234 75.2
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.1e-97 360.1 209 82.3
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.1e-97 360.1 213 81.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.5e-97 359.0 198 84.3
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.5e-97 359.0 213 80.3
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 5.6e-97 357.8 213 78.9
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 5.6e-97 357.8 208 80.3
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.2e-96 356.7 208 81.2
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.6e-96 356.3 213 77.5
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 1.6e-96 356.3 209 80.4
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.1e-95 353.6 207 79.7
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.1e-95 353.6 213 79.3
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.1e-95 353.6 213 78.9
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.4e-95 352.4 207 79.2
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.4e-95 352.4 208 79.3
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 5.2e-95 351.3 208 77.4
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 6.8e-95 350.9 206 77.7
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 8.9e-95 350.5 193 86.5
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 8.9e-95 350.5 210 75.7
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.2e-94 350.1 208 77.4
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 1.2e-94 350.1 206 77.7
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 1.5e-94 349.7 205 78.0
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 2.6e-94 349.0 204 79.4
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.4e-94 348.6 213 78.4
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 4.4e-94 348.2 213 78.4
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 4.4e-94 348.2 213 76.5
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 5.8e-94 347.8 207 77.3
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.6e-94 347.4 210 74.8
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 7.6e-94 347.4 206 77.2
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 7.6e-94 347.4 208 77.4
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 9.9e-94 347.1 205 77.6
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 9.9e-94 347.1 208 77.4
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.3e-93 346.7 206 76.7
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 1.3e-93 346.7 205 77.6
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.3e-93 346.7 213 77.9
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 1.3e-93 346.7 213 78.9
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.7e-93 346.3 206 76.7
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 2.2e-93 345.9 213 77.9
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 2.9e-93 345.5 208 77.9
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 3.8e-93 345.1 205 77.1
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 6.4e-93 344.4 213 76.5
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.1e-92 343.6 208 76.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 1.4e-92 343.2 206 75.7
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 4.2e-92 341.7 218 75.7
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 9.3e-92 340.5 206 74.8
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 9.3e-92 340.5 213 74.6
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.2e-91 340.1 208 75.0
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 1.2e-91 340.1 206 74.8
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 2.1e-91 339.3 211 75.4
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 2.7e-91 339.0 207 76.3
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 3.5e-91 338.6 208 73.1
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.3e-90 336.7 233 70.0
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.3e-90 336.7 211 72.5
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 3.3e-89 332.0 204 71.6
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 9.6e-89 330.5 203 73.9
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 9.6e-89 330.5 207 72.9
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 2.8e-88 328.9 208 72.6
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 3.6e-88 328.6 253 67.2
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 2.4e-87 325.9 209 72.7
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 6.9e-87 324.3 201 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 9.0e-87 323.9 203 70.4
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 4.4e-86 321.6 294 57.8
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 9.9e-86 320.5 209 71.3
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.7e-85 319.7 214 72.4
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.2e-83 313.5 212 71.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 4.6e-83 311.6 178 84.8
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 3.3e-81 305.4 428 44.2
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.4e-79 300.1 166 84.3
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.0e-78 296.2 173 82.1
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 1.5e-70 270.0 145 86.2
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 4.2e-68 261.9 145 84.8
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 1.9e-65 253.1 171 68.4
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 7.4e-65 251.1 145 77.2
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 7.4e-65 251.1 208 62.0
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.1e-55 220.7 139 69.1
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 5.0e-53 211.8 113 86.7
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.0e-49 199.9 195 50.3
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 9.7e-49 197.6 125 75.2
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.5e-46 190.3 211 46.9
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 6.1e-43 178.3 109 81.7
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 7.0e-39 164.9 160 51.9
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 1.2e-38 164.1 195 42.6
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 6.5e-37 158.3 88 80.7
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 8.0e-35 151.4 96 76.0
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.7e-32 143.7 95 72.6
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.7e-32 142.5 74 87.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 2.0e-30 136.7 79 84.8
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.6e-22 110.5 69 75.4
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 3.5e-22 109.4 75 68.0
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 7.2e-20 101.7 66 71.2
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 3.4e-17 92.8 72 66.7
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.9e-16 89.0 58 74.1
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 8.0e-11 71.6 40 85.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 9.8e-09 64.7 35 80.0
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 4.9e-08 62.4 59 57.6
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 6.4e-08 62.0 35 71.4
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 5.4e-07 58.9 32 87.5


User provided reference genes

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