Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 0.0e+00 1143.6 611 100.0
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 0.0e+00 1125.9 611 98.5
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.1e-305 1051.2 611 90.5
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 5.2e-289 997.3 612 85.8
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 8.4e-287 989.9 611 84.0
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 9.6e-275 949.9 611 81.3
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 6.4e-271 937.2 612 80.2
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 4.8e-266 921.0 613 79.3
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 9.0e-265 916.8 613 78.8
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.2e-261 906.4 613 78.0
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.9e-251 872.5 625 74.7
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 5.7e-251 870.9 611 75.6
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 4.1e-249 864.8 617 74.7
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 4.5e-248 861.3 617 74.6
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 5.0e-247 857.8 617 73.6
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.9e-246 855.9 637 72.1
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.0e-243 845.9 620 72.3
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.7e-242 842.8 640 71.6
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 2.2e-242 842.4 617 72.6
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.4e-241 839.7 624 72.1
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.1e-241 838.6 613 73.9
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 3.1e-241 838.6 623 73.4
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 5.3e-241 837.8 629 71.7
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 6.9e-241 837.4 619 73.2
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 1.2e-240 836.6 618 73.5
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 5.9e-240 834.3 634 70.5
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.1e-238 830.1 617 72.1
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 1.6e-237 826.2 623 70.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 8.0e-237 823.9 618 72.3
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.3e-236 822.4 632 70.9
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.3e-236 822.4 617 71.0
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 3.9e-236 821.6 619 72.2
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.7e-235 817.8 645 68.8
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 9.7e-235 817.0 636 72.0
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 7.0e-233 810.8 614 70.8
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 1.6e-232 809.7 613 71.8
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 7.7e-232 807.4 637 70.3
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 7.7e-232 807.4 637 70.3
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 7.7e-232 807.4 618 71.4
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 2.2e-231 805.8 618 71.2
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.9e-231 805.4 614 70.5
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 3.8e-231 805.1 632 69.9
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.9e-230 802.7 612 70.8
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.5e-230 801.2 614 70.5
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 9.4e-230 800.4 614 70.4
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 5.2e-228 794.7 653 67.4
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.5e-227 790.8 624 69.7
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 8.2e-226 787.3 616 68.5
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 3.1e-225 785.4 620 71.5
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 4.1e-225 785.0 615 69.3
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.6e-224 783.1 616 68.7
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.6e-224 783.1 629 68.7
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 5.9e-224 781.2 640 66.7
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.9e-223 778.9 763 59.2
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.0e-223 778.1 618 67.6
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 1.5e-222 776.5 637 66.9
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.6e-221 773.1 639 65.9
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.1e-221 772.7 618 71.7
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 4.7e-221 771.5 642 66.2
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 8.0e-221 770.8 618 68.3
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 5.2e-220 768.1 642 66.8
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 7.5e-219 764.2 625 71.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 8.3e-218 760.8 627 65.9
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.3e-215 753.4 630 65.9
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 6.5e-215 751.1 508 76.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 1.9e-214 749.6 628 63.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 4.7e-213 745.0 613 66.4
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.0e-212 743.8 628 65.3
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.0e-212 743.8 639 63.7
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 3.0e-212 742.3 626 65.0
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 5.2e-212 741.5 641 64.4
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 1.2e-211 740.3 628 64.3
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 2.6e-211 739.2 630 62.9
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 4.9e-210 734.9 649 63.2
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.1e-209 733.8 639 63.1
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.4e-209 733.4 631 63.4
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.2e-208 730.3 626 64.1
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 7.8e-208 727.6 638 62.7
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 8.6e-207 724.2 628 63.5
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.3e-206 722.2 620 63.7
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 3.3e-206 722.2 620 63.7
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 3.3e-206 722.2 578 66.8
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.6e-206 721.5 635 61.9
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 3.6e-205 718.8 614 64.7
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 3.6e-205 718.8 649 62.2
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 3.6e-205 718.8 622 63.2
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 2.3e-204 716.1 637 63.1
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 4.0e-204 715.3 616 63.5
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 4.0e-204 715.3 616 63.5
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 5.2e-204 714.9 606 65.2
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.5e-203 713.4 644 60.7
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.5e-203 713.4 650 60.3
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 3.4e-203 712.2 618 63.1
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.8e-201 706.4 656 61.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 2.4e-201 706.1 617 63.4
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 2.7e-200 702.6 648 61.6
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 8.6e-199 697.6 621 61.8
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.5e-198 696.8 650 59.2
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.2e-195 687.2 618 60.8
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 9.8e-195 684.1 569 65.0
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 9.8e-195 684.1 490 73.9
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.4e-193 680.2 654 59.2
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.2e-193 679.1 615 61.1
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 3.5e-184 649.0 460 72.8
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 1.1e-182 644.0 638 58.9
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 6.8e-180 634.8 622 58.2
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 9.2e-177 624.4 430 75.1
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 2.7e-176 622.9 641 55.5
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.3e-175 619.8 680 54.6
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 6.6e-175 618.2 613 57.9
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.4e-172 609.8 398 76.4
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.2e-169 599.0 616 55.2
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.3e-167 594.0 819 46.0
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 6.9e-164 581.6 625 56.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 4.6e-160 568.9 554 57.9
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 4.3e-158 562.4 455 64.4
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.6e-157 560.5 462 64.1
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 9.0e-156 554.7 613 53.5
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 2.0e-155 553.5 635 52.8
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 1.1e-153 547.7 655 47.9
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 5.8e-147 525.4 364 72.5
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.2e-146 523.5 637 48.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 5.5e-145 518.8 618 51.1
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 8.7e-143 511.5 316 80.7
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 8.2e-141 505.0 643 47.3
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.2e-136 491.1 675 44.4
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 6.7e-135 485.3 301 79.4
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 4.2e-129 466.1 316 74.4
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 8.2e-117 425.2 317 68.1
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 1.8e-116 424.1 561 45.8
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.7e-109 401.0 299 67.6
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 5.9e-99 365.9 316 64.9
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 8.0e-88 328.9 258 64.7
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 8.0e-88 328.9 258 64.7
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.6e-72 278.1 262 59.2
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.2e-51 208.8 360 37.2
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 1.2e-46 192.2 243 52.3
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 4.9e-45 186.8 167 66.5
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 8.4e-29 132.9 144 54.2
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.5e-28 131.3 321 33.0
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.7e-27 127.9 194 47.9
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 5.7e-25 120.2 387 30.7
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.8e-23 115.2 158 52.5
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.4e-23 114.8 92 69.6
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 8.2e-16 89.7 87 54.0
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.1e-15 89.4 146 46.6
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.1e-15 87.4 135 46.7
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 2.5e-12 78.2 109 52.3
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 2.5e-12 78.2 149 45.0
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 7.2e-12 76.6 149 43.0
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 8.8e-10 69.7 135 40.0
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 5.3e-07 60.5 162 34.0
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 2.0e-06 58.5 67 49.3


User provided reference genes

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