Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G278500 Gossypium raimondii HOM05D005281 ORTHO05D006351 2.0e-59 232.3 117 100.0
Gohir.D10G100400 Gossypium hirsutum HOM05D005281 ORTHO05D006351 3.2e-54 214.9 117 94.0
Gorai.001G116100 Gossypium raimondii HOM05D005281 ORTHO05D006351 8.5e-47 190.3 104 92.3
Gohir.D07G108000 Gossypium hirsutum HOM05D005281 ORTHO05D006351 3.2e-46 188.3 104 90.4
Gohir.A07G104200 Gossypium hirsutum HOM05D005281 ORTHO05D006351 9.4e-46 186.8 104 90.4
Gorai.011G110100 Gossypium raimondii HOM05D005281 ORTHO05D006351 1.4e-41 172.9 100 92.0
Thecc.09G301700 Theobroma cacao HOM05D005281 ORTHO05D006351 9.1e-41 170.2 99 86.9
Duzib150G1450 Durio zibethinus HOM05D005281 ORTHO05D006351 3.5e-40 168.3 104 82.7
Duzib168G1083 Durio zibethinus HOM05D005281 ORTHO05D006351 1.7e-39 166.0 104 80.8
COL.COLO4_19159 Corchorus olitorius HOM05D005281 ORTHO05D006351 1.2e-37 159.8 104 78.8
Manes.01G161500 Manihot esculenta HOM05D005281 ORTHO05D006351 1.4e-36 156.4 104 76.0
QL01p038286 Quercus lobata HOM05D005281 ORTHO05D006351 5.2e-36 154.5 99 78.8
Prupe.6G057400 Prunus persica HOM05D005281 ORTHO05D006351 8.9e-36 153.7 104 72.1
MD03G1070600 Malus domestica HOM05D005281 ORTHO05D006351 2.0e-35 152.5 104 73.1
CiPaw.13G077500 Carya illinoinensis HOM05D005281 ORTHO05D006351 9.8e-35 150.2 103 73.8
TWI31G0978 Tripterygium wilfordii HOM05D005281 ORTHO05D006351 6.3e-34 147.5 106 71.7
Sabra09G0033500 Salix brachista HOM05D005281 ORTHO05D006351 8.3e-34 147.1 100 76.0
Haze_24325 Corylus avellana HOM05D005281 ORTHO05D006351 1.8e-33 146.0 103 70.9
Potri.009G046300 Populus trichocarpa HOM05D005281 ORTHO05D006351 4.1e-33 144.8 100 74.0
GSVIVG01024739001 Vitis vinifera HOM05D005281 ORTHO05D006351 1.2e-32 143.3 98 72.4
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.6e-32 142.9 104 68.3
MD11G1074600 Malus domestica HOM05D005281 ORTHO05D006351 1.6e-32 142.9 104 69.2
VMungo0540G0631 Vigna mungo HOM05D005281 ORTHO05D006351 1.6e-32 142.9 99 73.7
Cpa.g.sc415.3 Carica papaya HOM05D005281 ORTHO05D006351 2.7e-32 142.1 99 71.7
FAN11G1688 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.9e-32 141.0 104 64.4
FAN16G1244 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.9e-32 141.0 104 64.4
FAN25G0418 Fragaria x ananassa HOM05D005281 ORTHO05D006351 5.9e-32 141.0 104 64.4
FAN21G2151 Fragaria x ananassa HOM05D005281 ORTHO05D006351 7.8e-32 140.6 104 63.5
Hma1.2p1_0962F.1_g241910 Hydrangea macrophylla HOM05D005281 ORTHO05D006351 7.8e-32 140.6 104 65.4
Phvul.006G068100 Phaseolus vulgaris HOM05D005281 ORTHO05D006351 2.3e-31 139.0 106 67.9
FvH4_3g38560 Fragaria vesca HOM05D005281 ORTHO05D006351 3.8e-31 138.3 104 63.5
arahy.Tifrunner.gnm1.ann1.EQN3LQ Arachis hypogaea HOM05D005281 ORTHO05D006351 5.0e-31 137.9 110 64.5
arahy.Tifrunner.gnm1.ann1.UVB96A Arachis hypogaea HOM05D005281 ORTHO05D006351 5.0e-31 137.9 110 64.5
Ca_14931_v3 Cicer arietinum L. HOM05D005281 ORTHO05D006351 5.0e-31 137.9 99 68.7
RcHm_v2.0_Chr5g0069461 Rosa chinensis HOM05D005281 ORTHO05D006351 5.0e-31 137.9 101 66.3
Gohir.D05G266550 Gossypium hirsutum HOM05D005281 ORTHO05D006351 2.5e-30 135.6 73 94.5
Lalb_Chr18g0050941 Lupinus albus HOM05D005281 ORTHO05D006351 2.5e-30 135.6 106 66.0
CANSAT54G2372 Cannabis sativa HOM05D005281 ORTHO05D006351 4.3e-30 134.8 104 65.4
CSS0033286 Camellia sinensis var. sinensis HOM05D005281 ORTHO05D006351 7.3e-30 134.0 106 64.2
Glyma.11G175400 Glycine max HOM05D005281 ORTHO05D006351 9.5e-30 133.7 99 69.7
Lj1C137G10 Lonicera japonica HOM05D005281 ORTHO05D006351 9.5e-30 133.7 90 71.1
DCAR_007376 Daucus carota HOM05D005281 ORTHO05D006351 1.2e-29 133.3 104 62.5
Glyma.18G063000 Glycine max HOM05D005281 ORTHO05D006351 1.2e-29 133.3 106 66.0
Psat5g159280 Pisum sativum HOM05D005281 ORTHO05D006351 1.2e-29 133.3 99 66.7
Atru.chr3.4219 Acer truncatum HOM05D005281 ORTHO05D006351 2.1e-29 132.5 110 61.8
Actinidia23888 Actinidia chinensis HOM05D005281 ORTHO05D006351 6.1e-29 131.0 112 59.8
TPR.G21171 Trifolium pratense HOM05D005281 ORTHO05D006351 6.1e-29 131.0 99 65.7
Ciclev10028198m.g Citrus clementina HOM05D005281 ORTHO05D006351 1.0e-28 130.2 111 62.2
SGA_v2.0_scaffold120G32911 Striga asiatica HOM05D005281 ORTHO05D006351 1.0e-28 130.2 101 64.4
Nitab4.5_0000102g0060 Nicotiana tabacum HOM05D005281 ORTHO05D006351 1.4e-28 129.8 110 59.1
TAR633G1154 Trochodendron aralioides HOM05D005281 ORTHO05D006351 2.3e-28 129.0 106 62.3
Nitab4.5_0005463g0020 Nicotiana tabacum HOM05D005281 ORTHO05D006351 3.0e-28 128.6 110 58.2
Oeu045534.1 Olea europaea HOM05D005281 ORTHO05D006351 4.0e-28 128.3 98 63.3
PSO408G0002 Papaver somniferum HOM05D005281 ORTHO05D006351 4.0e-28 128.3 103 62.1
Migut.N00784 Erythranthe guttata HOM05D005281 ORTHO05D006351 5.2e-28 127.9 92 64.1
Medtr3g463770 Medicago truncatula HOM05D005281 ORTHO05D006351 5.2e-28 127.9 99 64.6
Sc21g0006330 Simmondsia chinensis HOM05D005281 ORTHO05D006351 5.2e-28 127.9 95 66.3
CAN.G1213.5 Capsicum annuum HOM05D005281 ORTHO05D006351 6.8e-28 127.5 110 59.1
Lj6g0025988 Lotus japonicus HOM05D005281 ORTHO05D006351 6.8e-28 127.5 99 66.7
CiPaw.14G059500 Carya illinoinensis HOM05D005281 ORTHO05D006351 8.9e-28 127.1 103 64.1
Rhsim01G0236400 Rhododendron simsii HOM05D005281 ORTHO05D006351 8.9e-28 127.1 112 58.0
SalBow2G0889 Salvia bowleyana HOM05D005281 ORTHO05D006351 8.9e-28 127.1 109 61.5
PGSC0003DMG400004159 Solanum tuberosum HOM05D005281 ORTHO05D006351 8.9e-28 127.1 110 59.1
PSO339G3076 Papaver somniferum HOM05D005281 ORTHO05D006351 1.2e-27 126.7 99 62.6
ECA247G0807 Erigeron canadensis HOM05D005281 ORTHO05D006351 1.5e-27 126.3 112 55.4
Peaxi162Scf00025g00089 Petunia axillaris HOM05D005281 ORTHO05D006351 2.0e-27 125.9 107 58.9
Sopen06g002070 Solanum pennellii HOM05D005281 ORTHO05D006351 3.4e-27 125.2 110 58.2
HanXRQChr08g0229401 Helianthus annuus HOM05D005281 ORTHO05D006351 4.4e-27 124.8 100 63.0
Hund04860 Selenicereus undatus HOM05D005281 ORTHO05D006351 2.2e-26 122.5 105 59.0
Cc01_g14190 Coffea canephora HOM05D005281 ORTHO05D006351 2.9e-26 122.1 91 64.8
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 2.9e-26 122.1 100 60.0
AUR62020131 Chenopodium quinoa HOM05D005281 ORTHO05D006351 2.4e-25 119.0 91 64.8
Nn2g11502 Nelumbo nucifera HOM05D005281 ORTHO05D006351 2.4e-25 119.0 99 62.6
AL8G35000 Arabidopsis lyrata HOM05D005281 ORTHO05D006351 3.2e-25 118.6 103 57.3
AUR62001645 Chenopodium quinoa HOM05D005281 ORTHO05D006351 3.2e-25 118.6 91 64.8
MBI14_g42908_MAGBIO Magnolia biondii HOM05D005281 ORTHO05D006351 3.2e-25 118.6 104 59.6
Sp6g20410 Schrenkiella parvula HOM05D005281 ORTHO05D006351 3.2e-25 118.6 96 61.5
vmacro14592 Vaccinium macrocarpon HOM05D005281 ORTHO05D006351 3.2e-25 118.6 137 49.6
Aqoxy4G02562 Aquilegia oxysepala HOM05D005281 ORTHO05D006351 4.1e-25 118.2 92 59.8
ClCG02G019550 Citrullus lanatus HOM05D005281 ORTHO05D006351 7.0e-25 117.5 88 63.6
CsaV3_6G016220 Cucumis sativus L. HOM05D005281 ORTHO05D006351 9.2e-25 117.1 88 64.8
Eucgr.J01912 Eucalyptus grandis HOM05D005281 ORTHO05D006351 2.0e-24 115.9 100 57.0
BcaB01g04640 Brassica carinata HOM05D005281 ORTHO05D006351 2.7e-24 115.5 96 61.5
C03p14150 Brassica napus HOM05D005281 ORTHO05D006351 2.7e-24 115.5 96 61.5
EL10Ac7g16168 Beta vulgaris HOM05D005281 ORTHO05D006351 3.5e-24 115.2 95 58.9
THA.LOC104799394 Tarenaya hassleriana HOM05D005281 ORTHO05D006351 4.6e-24 114.8 105 57.1
AT5G58720 Arabidopsis thaliana HOM05D005281 ORTHO05D006351 6.0e-24 114.4 103 55.3
BolC3t13861H Brassica oleracea HOM05D005281 ORTHO05D006351 1.0e-23 113.6 96 60.4
A03p12060 Brassica napus HOM05D005281 ORTHO05D006351 1.7e-23 112.8 92 62.0
BraA03t10518Z Brassica rapa HOM05D005281 ORTHO05D006351 1.7e-23 112.8 92 62.0
Thhalv10013268m.g Eutrema salsugineum HOM05D005281 ORTHO05D006351 1.7e-23 112.8 96 60.4
MELO3C025849.2 Cucumis melo HOM05D005281 ORTHO05D006351 2.3e-23 112.5 94 60.6
FAN08G2328 Fragaria x ananassa HOM05D005281 ORTHO05D006351 3.0e-23 112.1 102 61.8
FAN18G1833 Fragaria x ananassa HOM05D005281 ORTHO05D006351 3.9e-23 111.7 103 60.2
CARHR272630 Cardamine hirsuta HOM05D005281 ORTHO05D006351 1.1e-22 110.2 105 54.3
A02p07560 Brassica napus HOM05D005281 ORTHO05D006351 1.5e-22 109.8 96 58.3
C02p13130 Brassica napus HOM05D005281 ORTHO05D006351 1.5e-22 109.8 96 58.3
BolC2t07431H Brassica oleracea HOM05D005281 ORTHO05D006351 1.5e-22 109.8 96 58.3
BraA02t05834Z Brassica rapa HOM05D005281 ORTHO05D006351 1.5e-22 109.8 96 58.3
Sed0014563 Sechium edule HOM05D005281 ORTHO05D006351 1.5e-22 109.8 92 60.9
RcHm_v2.0_Chr7g0203221 Rosa chinensis HOM05D005281 ORTHO05D006351 2.5e-22 109.0 99 60.6
BcaC03g14078 Brassica carinata HOM05D005281 ORTHO05D006351 3.3e-22 108.6 90 61.1
Aa31LG11G480 Aethionema arabicum HOM05D005281 ORTHO05D006351 5.6e-22 107.8 103 56.3
RcHm_v2.0_Chr7g0203081 Rosa chinensis HOM05D005281 ORTHO05D006351 7.3e-22 107.5 90 63.3
BcaB05g22447 Brassica carinata HOM05D005281 ORTHO05D006351 1.2e-21 106.7 94 58.5
FAN04G2173 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.2e-21 106.7 94 62.8
Ah.15g100320 Amaranthus hybridus HOM05D005281 ORTHO05D006351 3.6e-21 105.1 79 63.3
FvH4_5g18840 Fragaria vesca HOM05D005281 ORTHO05D006351 6.2e-21 104.4 100 57.0
FAN13G0267 Fragaria x ananassa HOM05D005281 ORTHO05D006351 6.2e-21 104.4 102 57.8
FAN18G0195 Fragaria x ananassa HOM05D005281 ORTHO05D006351 6.2e-21 104.4 100 57.0
FAN04G3220 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.1e-20 103.6 100 56.0
ATR0618G420 Amborella trichopoda HOM05D005281 ORTHO05D006351 1.8e-20 102.8 90 55.6
FAN18G1830 Fragaria x ananassa HOM05D005281 ORTHO05D006351 2.0e-19 99.4 95 55.8
BcaB01g04497 Brassica carinata HOM05D005281 ORTHO05D006351 9.8e-19 97.1 67 73.1
Zm00001eb119510 Zea mays HOM05D005281 ORTHO05D006351 1.3e-18 96.7 103 48.5
HPP92_005265 Vanilla planifolia HOM05D005281 ORTHO05D006351 1.7e-18 96.3 112 50.9
SEGI_19872 Sequoiadendron giganteum HOM05D005281 ORTHO05D006351 4.9e-18 94.7 100 52.0
Pp3c15_15290 Physcomitrium patens HOM05D005281 ORTHO05D006351 2.4e-17 92.4 88 52.3
Gorai.013G173700 Gossypium raimondii HOM05D012496 ORTHO05D029810 3.2e-17 92.0 58 81.0
Lsat_1_v5_gn_9_20081 Lactuca sativa HOM05D005281 ORTHO05D006351 2.1e-16 89.4 95 49.5
ATR0680G131 Amborella trichopoda HOM05D004205 ORTHO05D004977 1.3e-15 86.7 104 40.4
FvH4_5g18730 Fragaria vesca HOM05D005281 ORTHO05D006351 8.6e-15 84.0 85 54.1
Mapoly0033s0127 Marchantia polymorpha HOM05D005281 ORTHO05D006351 5.6e-14 81.3 93 47.3
TAR369G0560 Trochodendron aralioides HOM05D000038 ORTHO05D000143 1.2e-13 80.1 66 62.1
Gorai.005G133400 Gossypium raimondii HOM05D018944 ORTHO05D006351 1.2e-11 73.6 43 90.7
Dinv14436 Davidia involucrata HOM05D005281 ORTHO05D006351 7.5e-11 70.9 67 58.2
Rhsim13G0177000 Rhododendron simsii HOM05D001170 ORTHO05D006602 1.3e-10 70.1 104 35.6
AagrBONN_evm.TU.Sc2ySwM_228.1724 Anthoceros agrestis HOM05D005281 ORTHO05D006351 1.7e-10 69.7 88 43.2
TAR629G3452 Trochodendron aralioides HOM05D004205 ORTHO05D004977 1.7e-10 69.7 109 39.4
Manes.17G044200 Manihot esculenta HOM05D004205 ORTHO05D004977 3.7e-10 68.6 88 38.6
Prupe.4G045500 Prunus persica HOM05D004205 ORTHO05D004977 4.9e-10 68.2 97 38.1
Eucgr.E03316 Eucalyptus grandis HOM05D004205 ORTHO05D004977 1.1e-09 67.0 86 38.4
Dinv40546 Davidia involucrata HOM05D000770 ORTHO05D000586 2.4e-09 65.9 88 38.6
FAN02G1210 Fragaria x ananassa HOM05D004205 ORTHO05D004977 2.4e-09 65.9 102 38.2
FAN05G1067 Fragaria x ananassa HOM05D004205 ORTHO05D004977 3.2e-09 65.5 102 38.2
Actinidia05622 Actinidia chinensis HOM05D004205 ORTHO05D004977 7.1e-09 64.3 90 37.8
CiPaw.09G058700 Carya illinoinensis HOM05D004205 ORTHO05D004977 1.2e-08 63.5 88 39.8
AUR62016996 Chenopodium quinoa HOM05D004205 ORTHO05D004977 1.6e-08 63.2 92 37.0
FAN05G3867 Fragaria x ananassa HOM05D004205 ORTHO05D004977 1.6e-08 63.2 116 36.2
CiPaw.11G172400 Carya illinoinensis HOM05D004205 ORTHO05D004977 2.1e-08 62.8 88 36.4
FvH4_3g09380 Fragaria vesca HOM05D004205 ORTHO05D004977 2.7e-08 62.4 88 39.8
FAN11G3868 Fragaria x ananassa HOM05D004205 ORTHO05D004977 2.7e-08 62.4 88 39.8
FAN16G2123 Fragaria x ananassa HOM05D004205 ORTHO05D004977 2.7e-08 62.4 88 39.8
Thecc.06G189300 Theobroma cacao HOM05D004205 ORTHO05D004977 2.7e-08 62.4 97 32.0
FAN21G3767 Fragaria x ananassa HOM05D004205 ORTHO05D004977 3.5e-08 62.0 88 39.8
EL10Ac8g20368 Beta vulgaris HOM05D004205 ORTHO05D004977 4.6e-08 61.6 103 35.9
RcHm_v2.0_Chr5g0008211 Rosa chinensis HOM05D004205 ORTHO05D004977 4.6e-08 61.6 86 40.7
Aqoxy1G02498 Aquilegia oxysepala HOM05D004205 ORTHO05D004977 7.8e-08 60.8 104 38.5
Zm00001eb126060 Zea mays HOM05D000188 ORTHO05D006351 7.8e-08 60.8 49 59.2
FvH4_6g17870 Fragaria vesca HOM05D004205 ORTHO05D004977 1.0e-07 60.5 88 38.6
FAN14G3790 Fragaria x ananassa HOM05D004205 ORTHO05D004977 1.0e-07 60.5 88 38.6
Gohir.A10G025100 Gossypium hirsutum HOM05D004205 ORTHO05D004977 1.3e-07 60.1 99 36.4
Gohir.D05G229650 Gossypium hirsutum HOM05D012496 ORTHO05D029810 1.3e-07 60.1 27 96.3
Gohir.A12G138133 Gossypium hirsutum HOM05D012496 ORTHO05D029810 1.7e-07 59.7 26 100.0
Gohir.D13G119500 Gossypium hirsutum HOM05D012496 ORTHO05D029810 1.7e-07 59.7 26 100.0
GSVIVG01002063001 Vitis vinifera HOM05D004205 ORTHO05D004977 1.7e-07 59.7 86 36.0
Zm00001eb351660 Zea mays HOM05D000188 ORTHO05D006351 1.7e-07 59.7 49 57.1
Zm00001eb196370 Zea mays HOM05D005281 ORTHO05D006351 2.3e-07 59.3 46 60.9
CBR_g17683 Chara braunii HOM05D005281 ORTHO05D006351 5.1e-07 58.2 95 32.6
Nn1g06581 Nelumbo nucifera HOM05D004205 ORTHO05D004977 6.6e-07 57.8 88 36.4
Os02g0639700 Oryza sativa ssp. japonica HOM05D004205 ORTHO05D004977 6.6e-07 57.8 80 36.2
Prupe.4G184000 Prunus persica HOM05D004205 ORTHO05D004977 8.6e-07 57.4 88 35.2
Zm00001eb185730 Zea mays HOM05D004205 ORTHO05D004977 1.1e-06 57.0 91 36.3
Hund21230 Selenicereus undatus HOM05D004205 ORTHO05D004977 1.5e-06 56.6 106 33.0
TAR381G1102 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.9e-06 56.2 71 50.7
Gohir.D10G025800 Gossypium hirsutum HOM05D004205 ORTHO05D004977 2.5e-06 55.8 99 34.3
Gorai.011G027100 Gossypium raimondii HOM05D004205 ORTHO05D004977 2.5e-06 55.8 99 34.3
TWI39G0425 Tripterygium wilfordii HOM05D004205 ORTHO05D004977 2.5e-06 55.8 105 33.3
Cfa000433 Carpinus fangiana HOM05D001170 ORTHO05D006602 3.3e-06 55.5 103 35.9
Duzib213G0975 Durio zibethinus HOM05D004205 ORTHO05D004977 3.3e-06 55.5 88 36.4
Gorai.009G417800 Gossypium raimondii HOM05D032614 ORTHO05D047406 3.3e-06 55.5 25 100.0
Lj1C846T14 Lonicera japonica HOM05D004205 ORTHO05D004977 3.3e-06 55.5 88 35.2
Rhsim06G0197000 Rhododendron simsii HOM05D004205 ORTHO05D004977 5.6e-06 54.7 88 34.1
CDE02G4208 Ceratophyllum demersum HOM05D004205 ORTHO05D004977 9.5e-06 53.9 88 34.1


User provided reference genes

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