Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G272600 Gossypium raimondii HOM05D008766 ORTHO05D010886 5.5e-147 524.2 260 100.0
Gorai.002G004100 Gossypium raimondii HOM05D008766 ORTHO05D010886 2.1e-53 213.4 205 55.6
Gorai.005G199400 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.0e-52 211.1 231 51.1
Gorai.001G272100 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.7e-42 177.2 223 46.6
Gorai.008G056200 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.6e-37 160.6 195 44.1
Gorai.006G041800 Gossypium raimondii HOM05D008766 ORTHO05D010886 3.4e-35 152.9 144 54.2
Gorai.007G294400 Gossypium raimondii HOM05D008766 ORTHO05D010886 8.3e-34 148.3 138 58.0
Gorai.011G106400 Gossypium raimondii HOM05D008766 ORTHO05D010886 5.9e-32 142.1 198 40.9
Gorai.007G179900 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.5e-30 137.5 170 45.3
Gorai.008G091000 Gossypium raimondii HOM05D008766 ORTHO05D010886 2.0e-27 127.1 138 47.8
Gohir.D10G091850 Gossypium hirsutum HOM05D008766 ORTHO05D010886 1.8e-25 120.6 145 48.3
Gorai.001G185400 Gossypium raimondii HOM05D008766 ORTHO05D010886 7.0e-25 118.6 155 43.9
Gorai.008G191100 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.3e-23 114.4 94 55.3
Gorai.009G352100 Gossypium raimondii HOM05D008766 ORTHO05D010886 2.3e-23 113.6 183 35.0
Gorai.013G095600 Gossypium raimondii HOM05D008766 ORTHO05D010886 2.9e-23 113.2 101 54.5
Gorai.012G077800 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.5e-22 110.9 133 44.4
Gorai.004G040000 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.2e-21 107.8 129 45.0
Gorai.004G088300 Gossypium raimondii HOM05D008766 ORTHO05D010886 4.9e-18 95.9 184 33.7
Gorai.002G091600 Gossypium raimondii HOM05D008766 ORTHO05D010886 8.3e-18 95.1 106 47.2
Gorai.006G067600 Gossypium raimondii HOM05D008766 ORTHO05D010886 4.6e-16 89.4 101 45.5
Gorai.013G190000 Gossypium raimondii HOM05D008766 ORTHO05D010886 3.9e-15 86.3 135 37.0
Gorai.013G088900 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.1e-14 84.7 97 42.3
Gorai.005G126500 Gossypium raimondii HOM05D008766 ORTHO05D010886 4.3e-14 82.8 81 51.9
Gorai.009G393600 Gossypium raimondii HOM05D008766 ORTHO05D010886 5.6e-14 82.4 106 38.7
CiPaw.11G073400 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.2e-13 81.3 200 28.0
Gorai.008G088300 Gossypium raimondii HOM05D008766 ORTHO05D010886 2.1e-13 80.5 104 43.3
Gorai.009G323900 Gossypium raimondii HOM05D008766 ORTHO05D010886 6.2e-13 79.0 114 40.4
Gorai.013G171800 Gossypium raimondii HOM05D008766 ORTHO05D010886 6.2e-13 79.0 133 34.6
Gorai.001G176100 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.1e-12 78.2 166 32.5
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-12 77.8 192 29.7
Atru.chr8.1648 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-12 77.8 185 30.8
Gorai.007G164800 Gossypium raimondii HOM05D008766 ORTHO05D010886 2.3e-12 77.0 132 35.6
COL.COLO4_10225 Corchorus olitorius HOM05D000003 ORTHO05D000167 4.0e-12 76.3 190 27.9
COL.COLO4_09952 Corchorus olitorius HOM05D009774 ORTHO05D000167 6.8e-12 75.5 151 28.5
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-11 74.7 197 31.5
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 1.2e-11 74.7 183 29.0
CiPaw.15G035300 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.5e-11 74.3 216 26.9
Gohir.A02G096600 Gossypium hirsutum HOM05D008766 ORTHO05D013581 1.5e-11 74.3 190 28.9
Gorai.008G037100 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.5e-11 74.3 159 30.8
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-11 73.6 194 25.8
TWI53G0004 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-11 73.6 194 25.8
CiPaw.16G012000 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.4e-11 73.2 213 26.8
TWI23G0529 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.4e-11 72.8 188 27.7
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.4e-11 72.8 194 25.8
Atru.chr11.887 Acer truncatum HOM05D000003 ORTHO05D000167 7.5e-11 72.0 195 31.8
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.8e-11 71.6 188 27.7
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 3.7e-10 69.7 184 29.3
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.7e-10 69.7 194 25.3
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-10 69.3 187 31.6
Gorai.005G125100 Gossypium raimondii HOM05D008766 ORTHO05D010886 6.4e-10 68.9 103 35.9
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-10 68.6 190 29.5
Gorai.006G094100 Gossypium raimondii HOM05D000464 ORTHO05D010886 1.1e-09 68.2 66 51.5
Gorai.N009000 Gossypium raimondii HOM05D024994 ORTHO05D048119 1.1e-09 68.2 93 40.9
Atru.chr2.49 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-09 67.4 185 29.7
Sed0021352 Sechium edule HOM05D000003 ORTHO05D000167 1.9e-09 67.4 224 23.7
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 2.4e-09 67.0 185 28.1
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-09 66.6 246 25.2
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-09 66.6 187 24.6
Haze_13551 Corylus avellana HOM05D000003 ORTHO05D000167 4.1e-09 66.2 131 32.1
Sed0012627 Sechium edule HOM05D000003 ORTHO05D000004 4.1e-09 66.2 202 29.7
QL12p032525 Quercus lobata HOM05D000003 ORTHO05D000167 5.4e-09 65.9 216 25.0
Gorai.003G154500 Gossypium raimondii HOM05D012953 ORTHO05D013581 7.0e-09 65.5 202 27.2
TWI32G0745 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.2e-09 65.1 214 26.2
Gorai.001G073700 Gossypium raimondii HOM05D008766 ORTHO05D010886 1.2e-08 64.7 62 50.0
Atru.chr9.643 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-08 64.3 192 25.5
BraA02t06467Z Brassica rapa HOM05D001239 ORTHO05D000925 1.6e-08 64.3 187 29.4
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 1.6e-08 64.3 195 30.8
BraA08t33512Z Brassica rapa HOM05D001239 ORTHO05D000925 3.5e-08 63.2 193 26.4
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 3.5e-08 63.2 201 24.4
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-08 62.4 187 25.1
CANSAT21G2373 Cannabis sativa HOM05D000003 ORTHO05D000167 7.8e-08 62.0 195 25.1
BraA07t27837Z Brassica rapa HOM05D000003 ORTHO05D000004 1.0e-07 61.6 197 23.9
Atru.chr8.822 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-07 61.2 190 26.3
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.3e-07 61.2 186 23.1
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-07 60.8 190 29.5
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-07 60.8 190 29.5
BcaC02g12210 Brassica carinata HOM05D000003 ORTHO05D000925 1.7e-07 60.8 180 26.7
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-07 60.1 185 25.4
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-07 60.1 190 28.9
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 3.0e-07 60.1 195 27.2
CANSAT35G1518 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 60.1 196 24.0
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 3.9e-07 59.7 182 25.8
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 3.9e-07 59.7 193 28.5
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-07 59.7 125 31.2
CANSAT56G4436 Cannabis sativa HOM05D000003 ORTHO05D000004 3.9e-07 59.7 194 24.2
Atru.chr8.1143 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-07 59.3 125 32.8
Haze_12949 Corylus avellana HOM05D000003 ORTHO05D000167 5.0e-07 59.3 159 28.9
AL9U10020 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 6.6e-07 58.9 202 27.7
Haze_06429 Corylus avellana HOM05D009031 ORTHO05D000167 6.6e-07 58.9 131 26.0
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-07 58.5 188 24.5
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-07 58.5 130 30.0
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 8.6e-07 58.5 185 25.9
Atru.chr9.887 Acer truncatum HOM05D000003 ORTHO05D000006 8.6e-07 58.5 202 24.8
Haze_05735 Corylus avellana HOM05D009031 ORTHO05D000167 8.6e-07 58.5 132 31.1
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 58.2 211 25.6
Atru.chr8.605 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-06 58.2 195 25.1
AT2G04420 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.1e-06 58.2 196 27.0
CANSAT54G1379 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-06 58.2 192 24.5
RcHm_v2.0_Chr2g0147661 Rosa chinensis HOM05D000003 ORTHO05D010713 1.1e-06 58.2 186 28.5
Atru.chr1.1585 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 57.8 187 27.3
EL10Ac1g01308 Beta vulgaris HOM05D000003 ORTHO05D000167 1.5e-06 57.8 191 24.6
C06p08080 Brassica napus HOM05D001239 ORTHO05D000925 1.5e-06 57.8 122 32.0
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 57.4 185 27.6
Atru.chr9.679 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-06 57.4 190 28.4
CANSAT11G0149 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-06 57.4 194 24.2
Haze_13587 Corylus avellana HOM05D032658 ORTHO05D000167 1.9e-06 57.4 122 27.9
Haze_27611 Corylus avellana HOM05D009031 ORTHO05D000167 1.9e-06 57.4 121 32.2
Sed0004028 Sechium edule HOM05D000003 ORTHO05D000004 1.9e-06 57.4 189 26.5
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-06 57.0 157 27.4
Atru.chr6.1438 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-06 57.0 186 26.9
Gohir.A13G037750 Gossypium hirsutum HOM05D024994 ORTHO05D010886 2.5e-06 57.0 148 27.0
RcHm_v2.0_Chr3g0488841 Rosa chinensis HOM05D000003 ORTHO05D011454 3.3e-06 56.6 127 29.1
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 4.3e-06 56.2 186 24.2
EL10Ac9g21339 Beta vulgaris HOM05D000003 ORTHO05D000167 4.3e-06 56.2 187 26.7
BcaC01g00118 Brassica carinata HOM05D001239 ORTHO05D000925 4.3e-06 56.2 130 29.2
C07p36130 Brassica napus HOM05D001239 ORTHO05D000925 4.3e-06 56.2 131 27.5
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 4.3e-06 56.2 224 24.1
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 4.3e-06 56.2 121 28.9
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-06 55.8 202 26.7
Atru.chr6.1815 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-06 55.8 200 25.0
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-06 55.8 198 26.8
BcaC02g09573 Brassica carinata HOM05D001239 ORTHO05D000925 5.6e-06 55.8 124 26.6
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-06 55.8 192 24.5
Gohir.A09G046440 Gossypium hirsutum HOM05D008766 ORTHO05D010886 5.6e-06 55.8 78 39.7
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 7.3e-06 55.5 192 26.6
CiPaw.06G052300 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.3e-06 55.5 103 31.1
Gorai.001G145400 Gossypium raimondii HOM05D008766 ORTHO05D010886 7.3e-06 55.5 126 31.0
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 7.3e-06 55.5 200 25.0
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 9.5e-06 55.1 156 25.0
BolC4t26004H Brassica oleracea HOM05D008478 ORTHO05D000925 9.5e-06 55.1 109 28.4
Haze_03983 Corylus avellana HOM05D009031 ORTHO05D000167 9.5e-06 55.1 124 29.8
Haze_18357 Corylus avellana HOM05D025031 ORTHO05D000167 9.5e-06 55.1 157 27.4


User provided reference genes

Program Settings