Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G270900 Gossypium raimondii HOM05D004169 ORTHO05D004942 8.0e-227 790.0 382 100.0
Gohir.D05G259151 Gossypium hirsutum HOM05D004169 ORTHO05D004942 1.2e-198 696.4 401 88.3
Thecc.08G038200 Theobroma cacao HOM05D004169 ORTHO05D004942 2.0e-113 413.3 423 53.4
Duzib093G0775 Durio zibethinus HOM05D004169 ORTHO05D004942 8.5e-112 407.9 423 52.7
Duzib116G0263 Durio zibethinus HOM05D004169 ORTHO05D004942 9.4e-111 404.4 407 53.3
Cpa.g.sc140.24 Carica papaya HOM05D004169 ORTHO05D004942 1.5e-108 397.1 424 50.5
Nn5g29242 Nelumbo nucifera HOM05D004169 ORTHO05D004942 4.4e-108 395.6 423 51.1
GSVIVG01009830001 Vitis vinifera HOM05D004169 ORTHO05D004942 4.4e-108 395.6 423 51.3
Sabra02G0021500 Salix brachista HOM05D004169 ORTHO05D004942 1.7e-107 393.7 427 50.1
CANSAT35G1895 Cannabis sativa HOM05D004169 ORTHO05D004942 2.2e-107 393.3 423 51.8
Gohir.A05G188120 Gossypium hirsutum HOM05D004169 ORTHO05D004942 2.2e-107 393.3 423 51.5
Gorai.009G196500 Gossypium raimondii HOM05D004169 ORTHO05D004942 8.2e-107 391.3 423 51.3
Hma1.2p1_1386F.1_g279800 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 4.1e-106 389.0 423 50.4
Manes.18G017100 Manihot esculenta HOM05D004169 ORTHO05D004942 7.0e-106 388.3 404 51.5
PGR083G1299 Punica granatum HOM05D004169 ORTHO05D004942 1.6e-105 387.1 405 51.6
CsaV3_2G029300 Cucumis sativus L. HOM05D004169 ORTHO05D004942 3.5e-105 386.0 423 48.7
TAR628G0735 Trochodendron aralioides HOM05D004169 ORTHO05D004942 3.5e-105 386.0 423 51.1
CiPaw.07G153600 Carya illinoinensis HOM05D004169 ORTHO05D004942 7.7e-105 384.8 423 51.3
MELO3C010990.2 Cucumis melo HOM05D004169 ORTHO05D004942 1.0e-104 384.4 423 48.7
Cc10_g02050 Coffea canephora HOM05D004169 ORTHO05D004942 2.2e-104 383.3 406 49.8
Atru.chr13.351 Acer truncatum HOM05D004169 ORTHO05D004942 3.8e-104 382.5 436 49.1
MSTRG.1220 Avicennia marina HOM05D004169 ORTHO05D004942 1.5e-103 380.6 425 49.9
Lalb_Chr08g0246061 Lupinus albus HOM05D004169 ORTHO05D004942 1.5e-103 380.6 404 50.0
ATR0149G003 Amborella trichopoda HOM05D004169 ORTHO05D004942 1.9e-103 380.2 423 49.4
ClCG08G014480 Citrullus lanatus HOM05D004169 ORTHO05D004942 1.9e-103 380.2 423 48.9
Potri.002G027300 Populus trichocarpa HOM05D004169 ORTHO05D004942 2.5e-103 379.8 412 49.8
Eucgr.F01623 Eucalyptus grandis HOM05D004169 ORTHO05D004942 3.2e-103 379.4 423 48.5
Glyma.04G026500 Glycine max HOM05D004169 ORTHO05D004942 4.2e-103 379.0 423 49.6
MBI05_g16274_MAGBIO Magnolia biondii HOM05D004169 ORTHO05D004942 4.2e-103 379.0 424 49.8
Atru.chr13.350 Acer truncatum HOM05D004169 ORTHO05D004942 7.2e-103 378.3 428 48.6
Ca_02057_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 9.4e-103 377.9 423 49.9
arahy.Tifrunner.gnm1.ann1.CMA0H9 Arachis hypogaea HOM05D004169 ORTHO05D004942 1.2e-102 377.5 421 48.2
Ciclev10001334m.g Citrus clementina HOM05D004169 ORTHO05D004942 2.7e-102 376.3 429 49.2
HanXRQChr09g0269701 Helianthus annuus HOM05D004169 ORTHO05D004942 2.7e-102 376.3 424 49.1
Cfa013911 Carpinus fangiana HOM05D004169 ORTHO05D004942 3.6e-102 375.9 424 50.0
MSTRG.24262 Avicennia marina HOM05D004169 ORTHO05D004942 6.1e-102 375.2 423 50.1
Aqoxy6G02346 Aquilegia oxysepala HOM05D004169 ORTHO05D004942 2.3e-101 373.2 405 50.4
BraA01t01487Z Brassica rapa HOM05D004169 ORTHO05D004942 4.0e-101 372.5 437 48.3
THA.LOC104804855 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 4.0e-101 372.5 412 49.3
RcHm_v2.0_Chr6g0302201 Rosa chinensis HOM05D004169 ORTHO05D004942 5.2e-101 372.1 427 48.7
CARHR231560 Cardamine hirsuta HOM05D004169 ORTHO05D004942 6.8e-101 371.7 437 48.3
Glyma.17G255400 Glycine max HOM05D004169 ORTHO05D004942 6.8e-101 371.7 423 50.1
Oeu047750.1 Olea europaea HOM05D004169 ORTHO05D004942 6.8e-101 371.7 410 49.8
PSO675G0784 Papaver somniferum HOM05D004169 ORTHO05D004942 6.8e-101 371.7 404 50.0
Sp7g22120 Schrenkiella parvula HOM05D004169 ORTHO05D004942 6.8e-101 371.7 438 48.2
Phvul.009G014600 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 8.8e-101 371.3 423 49.2
TWI12G0121 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 8.8e-101 371.3 423 47.8
arahy.Tifrunner.gnm1.ann1.3VK2QG Arachis hypogaea HOM05D004169 ORTHO05D004942 1.2e-100 370.9 434 46.5
BcaC09g50903 Brassica carinata HOM05D004169 ORTHO05D004942 1.2e-100 370.9 434 48.4
Migut.C00795 Erythranthe guttata HOM05D004169 ORTHO05D004942 1.2e-100 370.9 423 48.9
Haze_22591 Corylus avellana HOM05D004169 ORTHO05D004942 1.5e-100 370.5 432 49.1
ECA246G0823 Erigeron canadensis HOM05D004169 ORTHO05D004942 1.5e-100 370.5 413 49.2
Oeu030387.1 Olea europaea HOM05D004169 ORTHO05D004942 1.5e-100 370.5 423 48.2
Oeu030389.1 Olea europaea HOM05D004169 ORTHO05D004942 1.5e-100 370.5 423 48.2
PSO541G3059 Papaver somniferum HOM05D004169 ORTHO05D004942 1.5e-100 370.5 404 49.8
AL7G29130 Arabidopsis lyrata HOM05D004169 ORTHO05D004942 2.0e-100 370.2 438 48.4
DCAR_013851 Daucus carota HOM05D004169 ORTHO05D004942 2.6e-100 369.8 423 48.2
Hund26864 Selenicereus undatus HOM05D004169 ORTHO05D004942 2.6e-100 369.8 426 49.1
QL02p010782 Quercus lobata HOM05D004169 ORTHO05D004942 3.4e-100 369.4 400 50.5
THA.LOC104806900 Tarenaya hassleriana HOM05D004169 ORTHO05D004942 3.4e-100 369.4 412 49.5
VMungo0647G1986 Vigna mungo HOM05D004169 ORTHO05D004942 3.4e-100 369.4 423 48.0
TPR.G30291 Trifolium pratense HOM05D004169 ORTHO05D004942 4.4e-100 369.0 423 48.0
A01p15480 Brassica napus HOM05D004169 ORTHO05D004942 5.7e-100 368.6 439 47.8
C01p19380 Brassica napus HOM05D004169 ORTHO05D004942 5.7e-100 368.6 434 48.2
BolC1t01866H Brassica oleracea HOM05D004169 ORTHO05D004942 5.7e-100 368.6 434 48.2
Phvul.001G009400 Phaseolus vulgaris HOM05D004169 ORTHO05D004942 5.7e-100 368.6 425 48.2
Potri.005G235200 Populus trichocarpa HOM05D004169 ORTHO05D004942 7.5e-100 368.2 423 48.0
HPP92_014629 Vanilla planifolia HOM05D004169 ORTHO05D004942 7.5e-100 368.2 424 47.9
Actinidia37978 Actinidia chinensis HOM05D004169 ORTHO05D004942 9.8e-100 367.9 404 49.8
Thhalv10025308m.g Eutrema salsugineum HOM05D004169 ORTHO05D004942 9.8e-100 367.9 439 47.6
Medtr3g113160 Medicago truncatula HOM05D004169 ORTHO05D004942 1.3e-99 367.5 404 48.8
Sc15g0002560 Simmondsia chinensis HOM05D004169 ORTHO05D004942 1.7e-99 367.1 423 48.5
Zm00001eb102970 Zea mays HOM05D004169 ORTHO05D004942 2.2e-99 366.7 421 47.5
AT4G24160 Arabidopsis thaliana HOM05D004169 ORTHO05D004942 2.8e-99 366.3 437 47.6
TWI56G0721 Tripterygium wilfordii HOM05D004169 ORTHO05D004942 2.8e-99 366.3 423 48.0
Hma1.2p1_0773F.1_g216220 Hydrangea macrophylla HOM05D004169 ORTHO05D004942 3.7e-99 365.9 404 49.5
Sed0010010 Sechium edule HOM05D004169 ORTHO05D004942 4.8e-99 365.5 424 47.4
FAN15G3243 Fragaria x ananassa HOM05D004169 ORTHO05D004942 6.3e-99 365.2 429 47.8
Sc26g0003230 Simmondsia chinensis HOM05D004169 ORTHO05D004942 8.3e-99 364.8 431 47.8
Glyma.14G216800 Glycine max HOM05D004169 ORTHO05D004942 1.1e-98 364.4 423 48.9
unitig_37.g13009 Utricularia gibba HOM05D004169 ORTHO05D004942 1.1e-98 364.4 416 48.1
ECA232G2227 Erigeron canadensis HOM05D004169 ORTHO05D004942 1.4e-98 364.0 423 47.5
Lsat_1_v5_gn_4_116000 Lactuca sativa HOM05D004169 ORTHO05D004942 1.4e-98 364.0 406 48.5
Os09g0520200 Oryza sativa ssp. japonica HOM05D004169 ORTHO05D004942 1.4e-98 364.0 404 48.8
VMungo1309G1829 Vigna mungo HOM05D004169 ORTHO05D004942 1.4e-98 364.0 409 49.4
C07p53400 Brassica napus HOM05D004169 ORTHO05D004942 1.8e-98 363.6 428 48.1
Lj1g0021833 Lotus japonicus HOM05D004169 ORTHO05D004942 1.8e-98 363.6 423 46.8
Carub.0007s1694 Capsella rubella HOM05D004169 ORTHO05D004942 2.4e-98 363.2 437 47.4
Prupe.1G370200 Prunus persica HOM05D004169 ORTHO05D004942 2.4e-98 363.2 432 48.6
BraA03t14568Z Brassica rapa HOM05D004169 ORTHO05D004942 3.1e-98 362.8 428 48.1
BolC7t45834H Brassica oleracea HOM05D004169 ORTHO05D004942 4.1e-98 362.5 428 47.9
EL10Ac1g00441 Beta vulgaris HOM05D004169 ORTHO05D004942 7.0e-98 361.7 413 48.9
Dinv39491 Davidia involucrata HOM05D004169 ORTHO05D004942 9.1e-98 361.3 424 47.4
A03p55080 Brassica napus HOM05D004169 ORTHO05D004942 1.2e-97 360.9 428 48.1
SGA_v2.0_scaffold17G08098 Striga asiatica HOM05D004169 ORTHO05D004942 1.2e-97 360.9 432 46.5
Migut.N03135 Erythranthe guttata HOM05D004169 ORTHO05D004942 1.6e-97 360.5 408 48.0
FvH4_2g39100 Fragaria vesca HOM05D004169 ORTHO05D004942 1.6e-97 360.5 431 46.9
Nitab4.5_0000352g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 4.5e-97 359.0 423 47.5
Actinidia22490 Actinidia chinensis HOM05D004169 ORTHO05D004942 5.9e-97 358.6 420 49.5
AUR62014419 Chenopodium quinoa HOM05D004169 ORTHO05D004942 5.9e-97 358.6 416 48.8
Actinidia22492 Actinidia chinensis HOM05D004169 ORTHO05D004942 7.7e-97 358.2 420 49.5
Peaxi162Scf00186g00012 Petunia axillaris HOM05D004169 ORTHO05D004942 1.0e-96 357.8 418 46.4
CSS0042982 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 1.3e-96 357.5 422 47.4
CSS0046054 Camellia sinensis var. sinensis HOM05D004169 ORTHO05D004942 1.3e-96 357.5 422 47.4
Lalb_Chr22g0354451 Lupinus albus HOM05D004169 ORTHO05D004942 1.7e-96 357.1 416 49.8
FAN20G1955 Fragaria x ananassa HOM05D004169 ORTHO05D004942 2.2e-96 356.7 441 46.5
Actinidia15392 Actinidia chinensis HOM05D004169 ORTHO05D004942 5.0e-96 355.5 414 47.8
AUR62019155 Chenopodium quinoa HOM05D004169 ORTHO05D004942 5.0e-96 355.5 438 47.7
Lsat_1_v5_gn_5_26101 Lactuca sativa HOM05D004169 ORTHO05D004942 5.0e-96 355.5 402 48.8
MD08G1017500 Malus domestica HOM05D004169 ORTHO05D004942 6.5e-96 355.1 421 48.7
Sopen07g015700 Solanum pennellii HOM05D004169 ORTHO05D004942 1.1e-95 354.4 423 47.0
HanXRQChr05g0156291 Helianthus annuus HOM05D004169 ORTHO05D004942 1.5e-95 354.0 413 47.0
Ah.05g171900 Amaranthus hybridus HOM05D004169 ORTHO05D004942 1.9e-95 353.6 404 48.8
TAR376G0386 Trochodendron aralioides HOM05D004169 ORTHO05D004942 2.5e-95 353.2 423 47.5
arahy.Tifrunner.gnm1.ann1.SD0DCP Arachis hypogaea HOM05D004169 ORTHO05D004942 5.5e-95 352.1 412 47.1
Aa31sc185G60 Aethionema arabicum HOM05D004169 ORTHO05D004942 1.2e-94 350.9 436 46.6
Medtr1g023340 Medicago truncatula HOM05D004169 ORTHO05D004942 1.6e-94 350.5 409 48.7
Sabra05G0181500 Salix brachista HOM05D004169 ORTHO05D004942 1.6e-94 350.5 433 46.2
Hund17227 Selenicereus undatus HOM05D004169 ORTHO05D004942 1.6e-94 350.5 426 46.9
arahy.Tifrunner.gnm1.ann1.T5GNGC Arachis hypogaea HOM05D004169 ORTHO05D004942 2.7e-94 349.7 412 46.8
MD15G1016400 Malus domestica HOM05D004169 ORTHO05D004942 2.7e-94 349.7 403 48.6
Lj5g0006972 Lotus japonicus HOM05D004169 ORTHO05D004942 8.0e-94 348.2 425 46.8
unitig_8.g3381 Utricularia gibba HOM05D004169 ORTHO05D004942 8.0e-94 348.2 401 49.1
vmacro21702 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 1.0e-93 347.8 408 46.6
CAN.G541.46 Capsicum annuum HOM05D004169 ORTHO05D004942 1.4e-93 347.4 423 46.3
Ca_13394_v3 Cicer arietinum L. HOM05D004169 ORTHO05D004942 4.0e-93 345.9 407 48.2
Psat6g005200 Pisum sativum HOM05D004169 ORTHO05D004942 2.0e-92 343.6 398 48.7
TPR.G34338 Trifolium pratense HOM05D004169 ORTHO05D004942 3.7e-91 339.3 401 47.6
Lj4C791T8 Lonicera japonica HOM05D004169 ORTHO05D004942 1.1e-90 337.8 377 49.1
Nitab4.5_0004368g0020 Nicotiana tabacum HOM05D004169 ORTHO05D004942 2.4e-90 336.7 423 45.4
DCAR_009941 Daucus carota HOM05D004169 ORTHO05D004942 7.7e-89 331.6 447 43.0
BcaNung06401 Brassica carinata HOM05D004169 ORTHO05D004942 1.2e-86 324.3 415 45.8
SalBow7G3670 Salvia bowleyana HOM05D004169 ORTHO05D004942 1.6e-86 323.9 320 53.1
Psat5g014480 Pisum sativum HOM05D004169 ORTHO05D004942 4.9e-83 312.4 349 49.0
Rhsim06G0026100 Rhododendron simsii HOM05D004169 ORTHO05D004942 2.7e-81 306.6 361 46.3
Rhsim07G0244700 Rhododendron simsii HOM05D004169 ORTHO05D004942 1.7e-80 303.9 500 39.4
SMO266G0010 Selaginella moellendorffii HOM05D004169 ORTHO05D004942 2.3e-80 303.5 414 42.0
Dinv31815 Davidia involucrata HOM05D004169 ORTHO05D004942 3.9e-80 302.8 400 43.2
BcaNung01121 Brassica carinata HOM05D004169 ORTHO05D004942 1.8e-77 293.9 278 54.0
AagrBONN_evm.TU.Sc2ySwM_362.1142 Anthoceros agrestis HOM05D004169 ORTHO05D004942 1.2e-76 291.2 417 41.0
Sed0000348 Sechium edule HOM05D004169 ORTHO05D004942 1.5e-76 290.8 349 45.3
Pp3c9_570 Physcomitrium patens HOM05D004169 ORTHO05D004942 2.2e-75 287.0 427 38.6
vmacro04328 Vaccinium macrocarpon HOM05D004169 ORTHO05D004942 4.9e-75 285.8 292 50.0
Gohir.D05G191200 Gossypium hirsutum HOM05D004169 ORTHO05D004942 5.4e-74 282.3 309 49.8
Mapoly0037s0009 Marchantia polymorpha HOM05D004169 ORTHO05D004942 5.0e-72 275.8 426 39.0
SGA_v2.0_scaffold92G28285 Striga asiatica HOM05D004169 ORTHO05D004942 2.2e-67 260.4 377 41.9
Glyma.06G026500 Glycine max HOM05D004169 ORTHO05D004942 6.6e-64 248.8 248 52.0
COL.COLO4_26191 Corchorus olitorius HOM05D004169 ORTHO05D004942 9.5e-63 245.0 374 42.8
MD00G1162000 Malus domestica HOM05D004169 ORTHO05D004942 5.8e-60 235.7 364 41.8
SEGI_38743 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 2.3e-56 223.8 244 47.5
CBR_g53937 Chara braunii HOM05D004169 ORTHO05D004942 3.0e-56 223.4 429 34.0
Solyc07g032180.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 8.7e-40 168.7 212 44.3
DCAR_009944 Daucus carota HOM05D004169 ORTHO05D004942 3.5e-33 146.7 108 60.2
Cre01.g000300 Chlamydomonas reinhardtii HOM05D004169 ORTHO05D004942 1.3e-32 144.8 302 33.4
Lsat_1_v5_gn_9_64701 Lactuca sativa HOM05D004169 ORTHO05D004942 1.5e-31 141.4 88 68.2
Solyc07g032170.3 Solanum lycopersicum HOM05D004169 ORTHO05D004942 7.4e-23 112.5 161 42.9
CARHR269140 Cardamine hirsuta HOM05D004169 ORTHO05D004942 4.8e-22 109.8 124 45.2
Cfa027320 Carpinus fangiana HOM05D004169 ORTHO05D004942 1.1e-21 108.6 271 30.3
Haze_22590 Corylus avellana HOM05D004169 ORTHO05D002838 5.3e-21 106.3 86 58.1
SEGI_29088 Sequoiadendron giganteum HOM05D004169 ORTHO05D004942 3.2e-18 97.1 88 59.1
PRCOL_00002006 Prasinoderma coloniale HOM05D004169 ORTHO05D004942 1.8e-16 91.3 282 27.0
COL.COLO4_27227 Corchorus olitorius HOM05D004169 ORTHO05D004942 2.7e-09 67.4 51 70.6
MCO08G266 Micromonas commoda HOM05D004169 ORTHO05D004942 1.7e-06 58.2 98 33.7


User provided reference genes

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