Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.6e-112 407.1 199 100.0
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.9e-111 404.4 199 99.0
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.9e-111 404.4 199 99.5
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.1e-76 288.1 215 72.1
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-73 278.1 201 73.6
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.3e-73 278.1 201 73.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.4e-72 275.4 213 68.1
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-71 273.5 201 72.1
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.9e-70 269.6 218 67.4
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 2.8e-66 255.8 220 67.7
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 7.7e-64 247.7 184 68.5
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 5.7e-59 231.5 209 61.7
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-57 227.3 221 59.7
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-55 220.3 222 58.1
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.2e-54 215.7 222 57.2
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.6e-53 213.4 224 58.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.1e-53 213.0 217 58.1
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 7.9e-53 211.1 223 57.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.1e-51 207.2 210 57.1
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 3.3e-51 205.7 216 56.5
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 5.7e-51 204.9 220 55.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.4e-51 204.5 213 55.4
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.3e-50 203.8 213 57.7
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.2e-50 203.0 207 56.0
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 6.3e-50 201.4 179 59.8
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.1e-49 200.7 219 54.8
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 2.4e-49 199.5 213 57.3
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.1e-49 199.1 219 55.3
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 4.1e-49 198.7 213 56.8
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.1e-49 198.7 213 56.8
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 7.0e-49 198.0 205 57.1
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 9.1e-49 197.6 220 55.5
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.2e-48 197.2 227 53.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.6e-48 196.8 205 52.2
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.0e-48 196.4 221 53.4
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.6e-48 196.1 213 56.3
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 5.9e-48 194.9 235 50.2
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.0e-47 194.1 213 52.1
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 2.2e-47 193.0 228 52.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.2e-47 193.0 221 55.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.1e-46 190.7 209 54.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.1e-46 190.7 202 54.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.1e-46 190.7 203 54.7
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.2e-45 187.2 216 54.6
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.6e-45 186.8 216 54.6
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 4.7e-45 185.3 203 54.7
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 6.1e-45 184.9 236 51.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-44 183.7 207 53.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 4.0e-44 182.2 203 54.2
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 5.2e-44 181.8 212 52.4
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 6.7e-44 181.4 216 51.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.5e-43 180.3 223 49.3
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.6e-43 179.5 212 50.9
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 7.5e-43 177.9 203 52.7
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.7e-42 176.8 229 48.5
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.7e-42 175.6 200 51.0
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-42 175.6 215 49.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 4.8e-42 175.3 215 49.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 8.2e-42 174.5 201 52.2
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.1e-41 172.2 211 51.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.6e-40 170.2 213 46.0
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-39 167.5 172 58.1
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.3e-39 167.2 214 50.9
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.3e-39 167.2 199 49.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.2e-39 166.4 172 57.6
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.9e-39 166.0 207 48.3
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 2.9e-39 166.0 228 46.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 6.5e-39 164.9 212 50.9
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.5e-39 164.5 241 46.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.9e-38 163.3 213 47.9
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.9e-38 163.3 243 43.6
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 7.2e-38 161.4 225 47.1
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.2e-37 160.6 208 47.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.6e-37 160.2 211 46.0
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.6e-37 159.1 222 46.8
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.6e-37 159.1 222 46.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.7e-37 158.7 213 45.5
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 6.1e-37 158.3 217 47.5
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 6.1e-37 158.3 229 45.0
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 8.0e-37 157.9 210 45.7
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.4e-36 157.1 207 44.4
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.8e-36 156.8 214 45.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.3e-36 156.4 215 45.1
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 4.0e-36 155.6 206 46.6
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.2e-36 155.2 179 49.7
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.8e-36 154.8 240 45.0
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 8.8e-36 154.5 215 45.6
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-35 154.1 213 44.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.0e-35 153.3 208 46.2
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.4e-35 152.1 209 45.5
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.4e-35 152.1 209 45.5
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 4.4e-35 152.1 209 45.5
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 4.4e-35 152.1 214 45.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 5.7e-35 151.8 209 44.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 5.7e-35 151.8 209 44.5
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 7.5e-35 151.4 152 60.5
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 9.8e-35 151.0 212 45.3
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 9.8e-35 151.0 199 47.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-34 150.6 226 43.4
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-34 150.6 212 44.8
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-34 149.4 208 45.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-34 149.4 211 44.5
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-34 149.4 211 44.5
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.8e-34 149.4 214 50.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.3e-34 148.3 209 44.5
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.3e-34 148.3 209 44.5
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.3e-34 148.3 209 44.5
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 6.3e-34 148.3 191 50.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 8.3e-34 147.9 206 44.7
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.8e-33 146.7 209 44.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.4e-33 146.4 180 48.3
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.1e-33 146.0 206 44.7
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 5.4e-33 145.2 207 44.0
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 5.4e-33 145.2 210 43.8
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 5.4e-33 145.2 210 43.8
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 5.4e-33 145.2 210 43.8
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 9.1e-33 144.4 202 44.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-32 144.1 194 45.4
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.2e-32 144.1 220 47.3
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.0e-31 141.0 202 42.6
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.0e-31 141.0 189 47.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.0e-31 138.7 222 42.8
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.5e-31 138.3 187 44.4
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 8.5e-31 137.9 204 42.2
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.5e-30 136.3 209 45.0
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 5.5e-30 135.2 130 60.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.6e-29 133.7 224 44.2
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.8e-29 132.9 205 42.9
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.0e-28 131.0 194 42.3
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.0e-28 129.4 195 40.0
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 6.8e-28 128.3 191 41.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.0e-27 126.7 133 57.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.0e-27 126.7 255 37.6
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.3e-26 124.0 197 42.6
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.3e-26 124.0 265 37.4
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.2e-26 123.2 215 39.5
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.8e-26 122.9 196 43.4
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-26 122.5 196 39.8
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.0e-24 116.7 177 40.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.0e-23 114.4 161 41.6
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.9e-23 112.8 167 43.7
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.3e-22 109.4 177 41.2
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 7.3e-22 108.2 176 39.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.3e-22 108.2 171 35.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.1e-21 106.7 170 41.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.7e-21 105.5 209 38.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 4.7e-21 105.5 107 57.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.0e-20 104.4 104 52.9
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-20 104.0 222 36.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 5.2e-20 102.1 152 48.0
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 4.4e-19 99.0 131 49.6
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.3e-18 97.4 210 34.3
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.2e-17 92.8 208 35.6
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.6e-16 90.5 102 48.0
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.5e-16 89.4 183 36.6
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 5.9e-16 88.6 183 36.6
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.6e-15 84.7 173 35.8
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.1e-14 84.3 102 45.1
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.9e-14 83.6 181 37.6
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-14 83.6 201 37.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-14 83.6 181 37.6
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-14 83.6 181 37.6
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.9e-14 83.6 201 37.3
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.2e-13 80.9 102 47.1
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.1e-13 80.1 172 34.3
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.3e-12 76.6 169 32.0
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.2e-12 75.5 204 33.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.6e-11 73.2 117 33.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 4.4e-11 72.4 261 30.7
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.0e-08 63.5 182 31.3
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 2.7e-08 63.2 86 40.7
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 3.0e-07 59.7 82 47.6


User provided reference genes

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