Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.5e-145 517.7 274 100.0
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.1e-141 505.8 274 97.1
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.4e-134 480.7 274 91.2
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.9e-73 280.0 288 62.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 9.5e-73 277.7 282 62.8
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 1.5e-62 243.8 292 56.2
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.3e-58 229.9 280 56.8
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.8e-56 223.0 280 54.3
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.1e-50 202.2 260 55.0
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.9e-42 176.0 294 45.9
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.7e-27 126.7 327 32.1
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.9e-26 122.9 331 36.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 6.7e-26 122.1 303 37.0
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-25 119.8 327 33.0
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-25 119.8 327 33.0
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.3e-25 119.8 295 33.6
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 9.7e-25 118.2 327 36.4
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.4e-23 114.4 305 31.5
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.4e-22 109.8 224 36.2
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.6e-22 108.6 292 32.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.0e-21 105.9 317 35.6
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 6.5e-21 105.5 321 32.4
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 8.5e-21 105.1 313 31.6
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 8.5e-21 105.1 314 35.4
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.9e-20 104.0 310 33.9
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.5e-20 103.6 230 31.3
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 2.5e-20 103.6 306 35.3
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 3.2e-20 103.2 336 34.2
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 3.2e-20 103.2 331 32.6
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 3.2e-20 103.2 308 33.4
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.2e-20 102.1 329 34.7
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 9.3e-20 101.7 317 33.4
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.1e-19 100.5 331 34.7
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 2.7e-19 100.1 267 31.5
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 3.6e-19 99.8 303 35.6
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 4.6e-19 99.4 316 34.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 7.9e-19 98.6 307 31.9
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.9e-19 98.6 366 33.3
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 7.9e-19 98.6 299 37.8
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 1.4e-18 97.8 321 32.4
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 3.0e-18 96.7 379 29.8
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 5.1e-18 95.9 296 36.8
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 8.8e-18 95.1 300 31.0
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 8.8e-18 95.1 295 36.3
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 8.8e-18 95.1 350 34.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 8.8e-18 95.1 313 34.2
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-17 94.7 327 31.2
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.1e-17 94.7 351 31.1
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.9e-17 94.0 324 30.2
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 4.3e-17 92.8 238 31.9
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 5.7e-17 92.4 344 32.8
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 9.7e-17 91.7 287 34.5
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 9.7e-17 91.7 322 32.3
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 1.3e-16 91.3 313 33.5
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.7e-16 90.9 220 36.4
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.8e-16 90.1 329 31.6
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 8.2e-16 88.6 293 33.8
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 8.2e-16 88.6 294 35.0
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 8.2e-16 88.6 293 33.8
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 8.2e-16 88.6 297 35.0
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 1.1e-15 88.2 357 30.0
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.1e-15 88.2 294 35.0
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.1e-15 88.2 341 29.0
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 1.8e-15 87.4 232 31.9
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 2.4e-15 87.0 294 34.7
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.4e-15 87.0 314 29.3
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 3.1e-15 86.7 224 30.8
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 3.1e-15 86.7 324 33.0
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 4.1e-15 86.3 303 30.0
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 4.1e-15 86.3 314 30.3
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 5.3e-15 85.9 319 33.5
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 5.3e-15 85.9 294 33.7
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 9.1e-15 85.1 381 27.8
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 1.5e-14 84.3 290 34.8
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.5e-14 84.3 333 26.1
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.5e-14 84.3 290 32.4
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 2.0e-14 84.0 292 31.2
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 2.0e-14 84.0 302 29.5
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.6e-14 83.6 326 29.1
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 2.6e-14 83.6 322 32.0
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 4.5e-14 82.8 299 35.1
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 4.5e-14 82.8 357 27.2
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 5.9e-14 82.4 324 33.6
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.0e-13 81.6 317 31.9
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 1.0e-13 81.6 291 31.3
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.3e-13 81.3 297 29.3
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.3e-13 81.3 296 31.1
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.3e-13 81.3 225 34.7
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 1.7e-13 80.9 385 29.9
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.2e-13 80.5 331 31.4
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 2.9e-13 80.1 289 34.6
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 2.9e-13 80.1 279 35.1
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.9e-13 80.1 371 29.1
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 2.9e-13 80.1 222 29.3
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 3.8e-13 79.7 301 35.2
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.8e-13 79.7 292 30.8
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 5.0e-13 79.3 226 33.6
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 6.5e-13 79.0 307 35.2
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 1.1e-12 78.2 315 29.8
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 1.1e-12 78.2 227 31.3
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 1.4e-12 77.8 220 32.7
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.4e-12 77.8 401 29.4
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.9e-12 77.4 211 31.8
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 2.5e-12 77.0 345 30.4
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 3.2e-12 76.6 304 34.5
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 5.5e-12 75.9 330 31.2
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.5e-12 75.9 332 29.2
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 9.4e-12 75.1 226 30.1
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 9.4e-12 75.1 256 27.7
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 9.4e-12 75.1 227 33.5
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.2e-11 74.7 226 30.1
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.6e-11 74.3 308 30.8
CDE02G0850 Ceratophyllum demersum HOM05D033134 ORTHO05D034264 2.7e-11 73.6 333 30.0
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 3.6e-11 73.2 331 29.3
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.7e-11 72.8 290 27.2
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 6.1e-11 72.4 330 28.2
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.9e-11 72.0 299 29.4
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.0e-10 71.6 190 40.5
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.8e-10 70.9 236 29.7
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.1e-10 69.3 375 28.0
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 6.7e-10 68.9 208 31.7
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 8.8e-10 68.6 344 29.7
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 1.1e-09 68.2 331 25.7
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.1e-09 68.2 255 25.9
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 1.5e-09 67.8 339 24.8
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 1.5e-09 67.8 309 34.3
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 2.0e-09 67.4 233 30.0
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 3.3e-09 66.6 234 31.2
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 3.3e-09 66.6 82 42.7
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 5.7e-09 65.9 188 41.0
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 7.4e-09 65.5 233 30.0
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 1.3e-08 64.7 295 26.1
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 1.3e-08 64.7 299 31.1
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.3e-08 64.7 302 29.5
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.7e-08 64.3 271 28.0
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 2.2e-08 63.9 339 29.8
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.7e-08 63.2 81 42.0
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.7e-08 63.2 335 25.7
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 6.3e-08 62.4 346 24.9
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 8.2e-08 62.0 329 24.3
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.2e-08 62.0 81 39.5
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.1e-07 61.6 335 30.1
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 1.1e-07 61.6 277 32.5
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 1.4e-07 61.2 173 39.9
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.4e-07 60.5 213 26.8
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 2.4e-07 60.5 328 25.6
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 3.1e-07 60.1 297 32.7
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 3.1e-07 60.1 302 24.2
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 3.1e-07 60.1 297 25.3
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 4.1e-07 59.7 282 24.8
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 5.3e-07 59.3 298 33.2
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 5.3e-07 59.3 321 29.3
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 6.9e-07 58.9 314 27.7
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 9.1e-07 58.5 292 29.1
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 1.5e-06 57.8 312 26.9
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 1.5e-06 57.8 294 28.9
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.5e-06 57.8 241 28.2
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 2.0e-06 57.4 103 35.0
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 2.6e-06 57.0 330 29.7
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 3.4e-06 56.6 151 31.1
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 3.4e-06 56.6 154 31.8
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 4.5e-06 56.2 307 26.7
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 5.9e-06 55.8 131 29.8
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 5.9e-06 55.8 414 22.7
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 7.7e-06 55.5 207 28.5


User provided reference genes

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