Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G179600 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.8e-84 315.8 153 100.0
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 5.0e-71 271.2 143 90.9
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 1.0e-63 246.9 143 78.3
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 3.8e-63 245.0 143 77.6
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.1e-57 224.9 145 71.7
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 4.1e-57 224.9 145 72.4
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.1e-57 224.9 145 72.4
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 2.2e-55 219.2 143 69.2
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 8.5e-55 217.2 143 67.1
Gohir.D05G174300 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.1e-54 216.9 107 98.1
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 1.9e-54 216.1 145 71.0
CiPaw.07G095900 Carya illinoinensis HOM05D002930 ORTHO05D003283 7.2e-54 214.2 143 69.2
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 7.2e-54 214.2 143 67.1
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 6.1e-53 211.1 151 66.2
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 8.8e-52 207.2 143 67.1
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 8.8e-52 207.2 145 66.9
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.2e-51 206.8 143 67.8
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 2.0e-51 206.1 145 67.6
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 3.7e-50 201.8 143 66.4
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 1.4e-49 199.9 151 65.6
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 2.4e-49 199.1 150 60.7
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 5.4e-49 198.0 143 65.7
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 7.0e-49 197.6 152 63.8
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 1.2e-48 196.8 145 66.2
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 1.6e-48 196.4 143 65.0
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 5.9e-48 194.5 145 65.5
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 1.0e-47 193.7 148 64.9
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 6.5e-47 191.0 146 65.1
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 8.5e-47 190.7 148 64.2
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 1.1e-46 190.3 148 64.2
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 1.5e-46 189.9 151 59.6
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 1.5e-46 189.9 146 63.7
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 1.5e-46 189.9 146 63.7
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 2.5e-46 189.1 136 64.0
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 4.2e-46 188.3 143 60.8
Psat6g169880 Pisum sativum HOM05D002930 ORTHO05D003283 4.2e-46 188.3 152 61.2
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 4.2e-46 188.3 143 57.3
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 1.6e-45 186.4 143 60.8
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 1.6e-45 186.4 145 62.1
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 6.1e-45 184.5 143 63.6
Gorai.012G158000 Gossypium raimondii HOM05D002930 ORTHO05D003283 8.0e-45 184.1 97 91.8
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 5.2e-44 181.4 145 61.4
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 6.8e-44 181.0 152 59.2
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 6.8e-44 181.0 143 60.1
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 1.2e-43 180.3 143 58.7
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 1.5e-43 179.9 143 61.5
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 2.6e-43 179.1 148 60.8
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 5.7e-43 177.9 143 57.3
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 5.7e-43 177.9 145 60.7
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 7.5e-43 177.6 143 60.1
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 1.7e-42 176.4 143 58.7
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 2.2e-42 176.0 145 61.4
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 2.2e-42 176.0 143 58.7
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 2.2e-42 176.0 143 58.7
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 2.8e-42 175.6 143 58.0
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 2.8e-42 175.6 143 58.7
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 1.1e-41 173.7 143 58.0
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 1.1e-41 173.7 143 56.6
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 1.1e-41 173.7 143 58.7
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 1.4e-41 173.3 143 58.0
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 1.4e-41 173.3 143 58.0
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 1.8e-41 172.9 143 57.3
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 7.0e-41 171.0 143 55.9
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 1.2e-40 170.2 149 54.4
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 2.7e-40 169.1 143 56.6
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 2.7e-40 169.1 143 56.6
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 3.5e-40 168.7 144 56.9
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 4.5e-40 168.3 143 54.5
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 5.9e-40 167.9 143 53.1
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 1.0e-39 167.2 143 54.5
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 1.0e-39 167.2 143 53.1
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 1.3e-39 166.8 143 56.6
Gohir.A08G185060 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.7e-39 166.4 91 85.7
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 1.7e-39 166.4 143 55.9
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 2.9e-39 165.6 141 56.0
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 2.5e-38 162.5 143 52.4
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 4.3e-38 161.8 131 58.0
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 7.3e-38 161.0 143 52.4
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 9.5e-38 160.6 134 57.5
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 2.8e-37 159.1 143 53.8
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 3.6e-37 158.7 133 57.9
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 4.7e-37 158.3 143 54.5
Gohir.D13G110101 Gossypium hirsutum HOM05D002930 ORTHO05D003283 6.1e-37 157.9 147 56.5
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 6.1e-37 157.9 147 56.5
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 5.2e-36 154.8 143 53.1
Aqoxy211s001 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 6.8e-36 154.5 143 51.0
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 6.8e-36 154.5 143 51.0
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 6.8e-36 154.5 131 56.5
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 1.2e-35 153.7 143 49.7
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 1.2e-35 153.7 143 54.5
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 2.0e-35 152.9 143 49.0
HPP92_027329 Vanilla planifolia HOM05D002930 ORTHO05D003283 2.0e-35 152.9 145 52.4
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 2.6e-35 152.5 149 50.3
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 4.4e-35 151.8 143 52.4
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 4.4e-35 151.8 143 50.3
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 7.5e-35 151.0 149 50.3
HPP92_017200 Vanilla planifolia HOM05D002930 ORTHO05D003283 7.5e-35 151.0 145 52.4
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 9.8e-35 150.6 143 53.1
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.7e-34 149.8 124 60.5
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 2.4e-33 146.0 124 57.3
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 1.2e-32 143.7 130 53.8
DCAR_012455 Daucus carota HOM05D002930 ORTHO05D003283 5.0e-31 138.3 152 50.0
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 1.9e-30 136.3 151 48.3
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 5.6e-30 134.8 130 52.3
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 7.3e-30 134.4 130 50.8
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 7.3e-30 134.4 130 51.5
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 9.5e-30 134.0 130 50.0
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 2.1e-29 132.9 145 46.9
Lalb_Chr04g0260851 Lupinus albus HOM05D002930 ORTHO05D003283 2.1e-29 132.9 130 50.8
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 4.7e-29 131.7 130 50.0
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 4.7e-29 131.7 130 45.4
MBI19_g21638_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 6.2e-29 131.3 208 39.4
CDE08G1131 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 7.5e-27 124.4 105 59.0
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 2.2e-26 122.9 130 46.2
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 2.9e-26 122.5 107 53.3
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 5.4e-25 118.2 120 51.7
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 2.7e-24 115.9 129 49.6
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 2.3e-23 112.8 98 53.1
Gohir.A08G185020 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.2e-21 107.1 53 96.2
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 1.6e-21 106.7 130 47.7
Gorai.005G109700 Gossypium raimondii HOM05D002930 ORTHO05D003283 1.1e-20 104.0 53 94.3
Gohir.D02G096000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.4e-20 103.6 53 92.5
Gohir.D10G213350 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.4e-20 103.6 53 92.5
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 2.3e-20 102.8 123 46.3
Gorai.008G067700 Gossypium raimondii HOM05D002930 ORTHO05D003283 8.9e-20 100.9 65 78.5
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 8.9e-20 100.9 52 88.5
CSS0000102 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D033878 1.3e-18 97.1 84 51.2
SHI15440 Sapria himalayana HOM05D002930 ORTHO05D003283 6.4e-18 94.7 53 77.4
Gohir.D01G034401 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.1e-17 94.0 51 90.2
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 7.1e-17 91.3 95 45.3
PGSC0003DMG400003808 Solanum tuberosum HOM05D002930 ORTHO05D003283 2.1e-16 89.7 100 43.0
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 6.0e-16 88.2 103 41.7
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 1.2e-13 80.5 53 69.8
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 8.9e-12 74.3 128 32.8
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 8.9e-12 74.3 143 30.8
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 1.5e-11 73.6 136 31.6
Hund05358 Selenicereus undatus HOM05D002930 ORTHO05D003283 2.0e-11 73.2 76 46.1
Gohir.D04G169700 Gossypium hirsutum HOM05D002930 ORTHO05D003283 9.9e-11 70.9 35 88.6
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 1.6e-08 63.5 127 32.3
Gohir.D12G152250 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.7e-08 62.8 42 66.7
Gorai.004G134200 Gossypium raimondii HOM05D002930 ORTHO05D003283 4.6e-08 62.0 42 64.3
QL03p004191 Quercus lobata HOM05D002930 ORTHO05D003283 4.6e-08 62.0 36 77.8
QL03p004772 Quercus lobata HOM05D002930 ORTHO05D003283 1.3e-07 60.5 36 75.0
arahy.Tifrunner.gnm1.ann1.MJP89X Arachis hypogaea HOM05D002930 ORTHO05D003283 5.1e-07 58.5 126 32.5


User provided reference genes

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