Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 3.7e-148 528.1 254 100.0
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.2e-147 525.0 254 99.6
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 3.2e-147 525.0 254 99.6
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 1.6e-114 416.4 252 79.0
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 4.6e-106 388.3 248 74.2
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.8e-102 376.3 248 72.6
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 2.4e-102 375.9 249 73.5
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 1.9e-99 366.3 251 72.9
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 8.2e-95 350.9 242 68.2
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 6.9e-94 347.8 261 66.3
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 1.5e-93 346.7 229 69.9
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 1.5e-93 346.7 256 66.0
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 2.6e-93 345.9 251 65.7
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.9e-91 339.7 248 66.5
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 7.2e-91 337.8 220 71.8
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 7.2e-91 337.8 230 70.9
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 1.8e-89 333.2 249 65.5
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 3.0e-89 332.4 263 63.5
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.1e-88 330.5 254 63.8
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 2.2e-87 326.2 236 66.9
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 1.1e-86 323.9 250 66.0
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 1.4e-86 323.6 250 66.0
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.8e-86 323.2 254 61.0
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 2.4e-86 322.8 253 62.5
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 2.4e-86 322.8 233 66.1
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 5.3e-86 321.6 242 64.5
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 2.0e-85 319.7 242 63.2
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 2.6e-85 319.3 251 63.7
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 5.9e-85 318.2 232 65.5
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 5.9e-85 318.2 232 65.5
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 2.2e-84 316.2 249 61.0
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 5.0e-84 315.1 233 64.8
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 6.5e-84 314.7 245 62.9
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 1.5e-83 313.5 258 61.2
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 5.5e-83 311.6 236 64.0
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 1.2e-82 310.5 243 65.4
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 1.6e-82 310.1 260 59.6
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 4.7e-82 308.5 241 62.7
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 6.1e-82 308.1 251 62.2
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 6.1e-82 308.1 244 62.3
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 8.0e-82 307.8 263 59.7
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 1.8e-81 306.6 223 64.6
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 1.8e-81 306.6 240 62.9
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 3.0e-81 305.8 241 61.4
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 3.0e-81 305.8 241 64.3
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 5.2e-81 305.1 237 63.3
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 6.7e-81 304.7 238 62.2
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 6.7e-81 304.7 246 62.2
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.7e-81 304.7 246 62.2
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.7e-81 304.7 246 62.2
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 8.8e-81 304.3 235 62.1
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 1.5e-80 303.5 236 62.3
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 2.6e-80 302.8 251 59.0
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 2.6e-80 302.8 241 59.3
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 3.3e-80 302.4 247 61.5
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 4.4e-80 302.0 255 60.0
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 9.7e-80 300.8 223 64.6
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 1.7e-79 300.1 220 67.3
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 2.2e-79 299.7 246 59.3
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 4.8e-79 298.5 241 61.0
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 8.2e-79 297.7 229 64.2
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.4e-78 297.0 247 60.7
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 1.8e-78 296.6 257 56.8
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 1.8e-78 296.6 229 64.2
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 1.8e-78 296.6 252 59.5
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 5.3e-78 295.0 226 62.8
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 1.2e-77 293.9 230 64.3
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 2.7e-77 292.7 237 61.2
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 5.9e-77 291.6 241 61.8
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 1.0e-76 290.8 229 63.8
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 1.0e-76 290.8 229 63.8
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 2.2e-76 289.7 226 63.3
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 2.2e-76 289.7 259 59.5
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.9e-76 289.3 225 62.7
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 2.9e-76 289.3 264 53.4
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 3.8e-76 288.9 230 63.5
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 3.8e-76 288.9 229 63.3
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.1e-75 287.3 244 59.8
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 1.5e-75 287.0 219 64.8
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 1.5e-75 287.0 233 59.2
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.5e-75 287.0 250 57.2
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 1.9e-75 286.6 314 50.0
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 2.5e-75 286.2 229 63.3
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 3.2e-75 285.8 244 61.9
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 5.5e-75 285.0 229 63.3
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 9.4e-75 284.3 230 61.3
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 4.7e-74 282.0 264 53.0
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 4.7e-74 282.0 258 54.7
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 4.7e-74 282.0 240 58.3
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 8.0e-74 281.2 186 69.9
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 8.0e-74 281.2 236 55.9
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 8.0e-74 281.2 255 53.3
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 1.0e-73 280.8 240 57.5
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 3.0e-73 279.3 235 59.1
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 3.0e-73 279.3 225 62.2
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 1.5e-72 276.9 247 55.1
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 2.0e-72 276.6 229 58.5
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 7.5e-72 274.6 247 56.7
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 9.8e-72 274.2 237 57.4
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 2.8e-71 272.7 244 58.2
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 6.3e-71 271.6 249 53.4
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 1.4e-70 270.4 242 56.6
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.3e-68 263.8 231 57.1
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 1.7e-68 263.5 237 57.4
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 2.9e-68 262.7 228 57.5
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 5.0e-68 261.9 204 61.3
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 3.2e-67 259.2 197 61.9
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 7.2e-67 258.1 237 55.3
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 1.6e-66 256.9 239 55.6
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 2.7e-66 256.1 254 51.2
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 3.0e-65 252.7 250 52.0
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 8.8e-65 251.1 251 53.4
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 9.8e-64 247.7 234 54.3
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 1.2e-61 240.7 233 53.6
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 2.1e-58 229.9 233 51.1
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 7.0e-54 214.9 247 47.0
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 2.6e-48 196.4 212 49.1
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 6.4e-47 191.8 159 59.7
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 1.4e-46 190.7 145 58.6
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 1.4e-46 190.7 135 63.0
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 1.6e-45 187.2 179 53.6
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 2.0e-45 186.8 161 59.0
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 3.3e-43 179.5 147 58.5
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 2.2e-31 140.2 146 47.9
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.0e-28 131.3 205 39.0
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.7e-28 130.6 153 41.8
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 2.1e-26 123.6 229 37.1
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 3.8e-23 112.8 82 59.8
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 4.6e-21 105.9 150 44.0
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 4.0e-17 92.8 97 55.7
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 2.4e-14 83.6 123 38.2
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 6.2e-10 68.9 180 32.8
Sp2g25370 Schrenkiella parvula HOM05D005683 ORTHO05D006958 8.1e-10 68.6 60 61.7
Lsat_1_v5_gn_2_125901 Lactuca sativa HOM05D002715 ORTHO05D002996 3.4e-08 63.2 145 33.1
HanXRQChr07g0203561 Helianthus annuus HOM05D002715 ORTHO05D002996 9.9e-08 61.6 147 32.7
ECA238G4170 Erigeron canadensis HOM05D002715 ORTHO05D002996 4.9e-07 59.3 141 33.3
CiPaw.09G216800 Carya illinoinensis HOM05D002715 ORTHO05D002996 4.2e-06 56.2 139 30.9
arahy.Tifrunner.gnm1.ann1.8N8WMT Arachis hypogaea HOM05D002715 ORTHO05D002996 7.1e-06 55.5 142 26.8
arahy.Tifrunner.gnm1.ann1.UC8GIG Arachis hypogaea HOM05D002715 ORTHO05D002996 9.3e-06 55.1 142 26.8


User provided reference genes

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