Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 4.4e-247 857.4 412 100.0
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.4e-245 852.4 412 99.3
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.1e-245 851.3 412 99.3
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 4.0e-224 781.2 411 91.0
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 5.4e-213 744.2 410 87.1
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.9e-210 735.7 405 87.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.5e-194 682.9 385 81.6
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 9.6e-194 680.2 402 81.1
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.8e-192 676.0 400 80.0
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.4e-191 671.8 405 79.0
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 5.8e-191 671.0 402 79.6
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.8e-190 668.3 401 77.1
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 2.4e-189 665.6 409 76.8
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 2.1e-188 662.5 392 79.8
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.5e-188 661.8 386 80.3
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.7e-187 659.4 402 77.4
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 9.6e-186 653.7 402 77.9
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.1e-185 652.5 400 76.8
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 4.8e-185 651.4 406 76.6
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 3.1e-184 648.7 397 76.8
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 4.0e-184 648.3 397 76.3
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 5.3e-184 647.9 399 76.7
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 6.9e-184 647.5 407 76.7
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 3.4e-183 645.2 401 77.1
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 2.9e-182 642.1 413 75.1
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 3.8e-182 641.7 404 73.5
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 3.8e-182 641.7 414 72.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.1e-181 640.2 408 76.5
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 3.2e-181 638.6 387 76.7
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 4.2e-181 638.3 437 70.3
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 6.0e-180 634.4 375 77.9
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 6.0e-180 634.4 426 73.2
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 7.9e-180 634.0 395 77.0
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.0e-179 633.6 395 76.7
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.0e-179 633.6 387 78.3
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-179 633.3 409 75.6
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.3e-179 633.3 401 73.3
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.8e-179 632.9 390 78.5
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.3e-179 632.5 382 77.2
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 5.1e-179 631.3 388 75.0
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 8.7e-179 630.6 373 78.0
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.9e-178 629.4 417 72.4
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 5.6e-178 627.9 402 74.9
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 9.6e-178 627.1 377 77.2
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.3e-177 626.7 404 72.8
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.1e-177 625.9 417 71.7
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.1e-176 623.6 405 75.6
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 1.4e-176 623.2 401 72.3
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 2.4e-176 622.5 377 75.3
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 3.1e-176 622.1 379 75.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 5.3e-176 621.3 404 72.3
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.2e-175 620.2 448 68.3
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 2.0e-175 619.4 420 71.4
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 2.0e-175 619.4 391 76.2
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 2.6e-175 619.0 405 73.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 2.6e-175 619.0 404 73.8
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 5.8e-175 617.8 390 75.6
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 1.3e-174 616.7 393 73.0
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 1.7e-174 616.3 405 71.1
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.9e-174 615.5 404 71.3
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 4.9e-174 614.8 407 72.0
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.1e-173 613.6 373 75.3
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.1e-173 613.6 373 75.3
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.5e-172 608.6 405 72.3
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 4.6e-172 608.2 375 75.2
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.3e-171 605.9 377 76.1
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 3.9e-171 605.1 376 74.2
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 6.7e-171 604.4 399 73.2
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.1e-170 603.6 411 71.0
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 4.8e-169 598.2 356 77.5
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.1e-168 597.0 407 70.8
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 1.1e-168 597.0 409 70.2
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 2.4e-168 595.9 389 71.2
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 2.4e-168 595.9 405 70.4
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.4e-168 595.9 403 71.0
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 3.1e-168 595.5 384 73.2
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 2.0e-167 592.8 335 82.7
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-166 590.1 421 70.8
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.1e-165 587.0 400 69.8
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.8e-163 579.7 404 69.3
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 2.2e-161 572.8 405 70.6
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.3e-158 563.5 347 74.9
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.3e-158 563.5 415 68.7
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.7e-158 563.1 380 69.7
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.6e-156 555.4 408 66.7
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.2e-151 540.4 405 65.7
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 2.5e-149 532.7 421 63.4
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 3.1e-144 515.8 382 62.8
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 9.1e-144 514.2 413 64.2
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.1e-141 507.3 372 65.1
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 1.5e-138 496.9 411 58.9
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 3.7e-137 492.3 338 67.8
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 5.9e-135 485.0 285 79.6
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.7e-134 483.4 318 71.7
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.9e-134 482.6 386 63.2
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 1.1e-128 464.2 298 75.2
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 2.2e-126 456.4 405 59.3
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.5e-125 453.0 369 58.5
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.5e-125 453.0 396 57.8
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 6.1e-124 448.4 306 71.6
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 6.8e-115 418.3 370 53.5
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 2.4e-112 409.8 420 48.6
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 3.9e-102 375.9 254 72.8
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 5.8e-98 362.1 245 71.0
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 4.6e-87 325.9 278 56.8
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 3.3e-85 319.7 370 46.2
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.7e-84 315.8 179 82.1
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.7e-81 307.4 392 42.9
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.9e-80 303.9 302 53.6
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 4.6e-79 299.3 439 42.6
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.0e-78 296.6 167 80.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.0e-78 296.6 167 80.8
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.6e-66 255.4 146 79.5
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 4.2e-56 223.0 128 82.8
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 7.1e-56 222.2 216 55.1
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 8.2e-52 208.8 139 71.9
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 2.9e-49 200.3 107 86.9
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 7.4e-45 185.7 293 36.9
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-44 184.9 99 84.8
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 3.1e-43 180.3 106 73.6
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 2.1e-39 167.5 93 80.6
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 6.1e-39 166.0 115 70.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 8.2e-36 155.6 89 78.7
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 9.4e-32 142.1 114 58.8
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.8e-28 130.6 80 68.8
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 2.3e-22 110.9 233 36.9
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.0e-22 110.5 160 43.1
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 1.2e-18 98.6 122 46.7
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 5.0e-09 66.6 75 49.3
HanXRQChr00c0537g0575611 Helianthus annuus HOM05D002999 ORTHO05D003137 6.5e-09 66.2 290 23.8
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 8.5e-09 65.9 235 25.1
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 8.5e-09 65.9 209 27.3
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 3.2e-08 63.9 266 25.2
HanXRQChr09g0256871 Helianthus annuus HOM05D002999 ORTHO05D003137 4.2e-08 63.5 238 23.9
HanXRQChr15g0466521 Helianthus annuus HOM05D002999 ORTHO05D003137 9.5e-08 62.4 238 23.9
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.2e-07 62.0 358 23.2
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 3.6e-07 60.5 216 25.9
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 1.0e-06 58.9 238 25.2
ECA247G2129 Erigeron canadensis HOM05D002999 ORTHO05D003137 1.4e-06 58.5 238 24.8
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 2.3e-06 57.8 257 25.7
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 2.3e-06 57.8 150 30.0
Sopen06g003630 Solanum pennellii HOM05D002999 ORTHO05D003137 2.3e-06 57.8 238 23.9
CBR_g29307 Chara braunii HOM05D002999 ORTHO05D003137 3.0e-06 57.4 252 23.4
Hma1.2p1_0643F.1_g194600 Hydrangea macrophylla HOM05D002999 ORTHO05D003137 3.0e-06 57.4 349 22.1
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 4.0e-06 57.0 205 25.4


User provided reference genes

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