Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 4.1e-189 664.5 314 100.0
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 6.6e-187 657.1 314 98.7
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.2e-185 652.9 314 98.4
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 6.2e-153 544.3 330 80.0
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 3.4e-151 538.5 314 81.2
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 5.3e-136 488.0 316 73.4
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 7.7e-135 484.2 317 72.9
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.2e-132 476.9 319 71.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 1.3e-129 466.8 319 69.9
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.7e-129 466.5 315 72.4
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 2.2e-129 466.1 319 71.2
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 7.7e-127 457.6 312 69.9
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.3e-126 456.8 312 70.2
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.7e-126 456.4 312 70.2
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.9e-126 455.7 314 71.3
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.9e-125 453.0 313 70.6
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.9e-125 453.0 312 69.2
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 3.2e-125 452.2 353 63.7
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.1e-124 449.5 316 68.4
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 3.6e-124 448.7 315 67.9
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 8.0e-124 447.6 312 67.9
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.4e-123 446.8 321 66.7
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.8e-123 446.4 318 66.7
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 3.0e-123 445.7 314 68.8
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.3e-122 442.2 315 66.3
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.7e-122 441.4 315 68.3
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 7.5e-122 441.0 317 65.6
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 7.5e-122 441.0 313 67.4
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.3e-121 440.3 314 66.9
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.7e-121 439.9 314 66.6
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 4.8e-121 438.3 317 65.3
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 4.8e-121 438.3 319 64.3
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 2.4e-120 436.0 319 67.1
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 9.1e-120 434.1 312 67.0
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 9.1e-120 434.1 318 67.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 2.6e-119 432.6 317 65.9
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 5.9e-119 431.4 312 65.4
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 3.8e-118 428.7 312 65.4
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 2.5e-117 426.0 315 65.1
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.5e-117 426.0 315 66.3
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 3.2e-117 425.6 312 66.3
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 2.7e-116 422.5 313 66.1
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 4.7e-116 421.8 314 65.6
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 8.0e-116 421.0 314 64.0
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 8.0e-116 421.0 317 64.0
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 8.0e-116 421.0 315 65.1
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.4e-115 420.2 321 65.4
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 1.8e-115 419.9 318 65.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.8e-115 419.9 314 64.3
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 2.3e-115 419.5 312 65.1
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 3.0e-115 419.1 313 65.2
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 3.0e-115 419.1 312 65.4
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 3.0e-115 419.1 322 63.7
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 4.0e-115 418.7 317 63.7
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 5.2e-115 418.3 323 64.7
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.8e-115 417.9 321 64.5
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.2e-114 417.2 314 65.9
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.2e-114 417.2 312 65.1
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.0e-114 416.4 312 65.1
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 4.4e-114 415.2 323 63.8
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 9.8e-114 414.1 318 64.2
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 1.3e-113 413.7 313 63.9
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 3.7e-113 412.1 312 65.1
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 4.8e-113 411.8 319 62.1
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.1e-112 410.6 319 63.3
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.8e-112 409.8 270 74.1
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 2.4e-112 409.5 320 63.1
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 4.5e-111 405.2 319 62.4
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 6.5e-110 401.4 316 61.1
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.2e-108 397.1 325 61.2
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 3.0e-107 392.5 312 62.8
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 6.8e-107 391.3 315 61.3
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.5e-106 390.2 328 60.4
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 9.8e-106 387.5 364 54.7
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 4.9e-105 385.2 328 59.8
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 4.9e-105 385.2 286 62.9
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 6.3e-105 384.8 316 58.5
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 4.1e-104 382.1 316 59.5
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 7.7e-103 377.9 315 59.7
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.7e-102 376.7 316 59.8
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.5e-101 373.6 312 59.9
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 3.6e-100 369.0 251 70.1
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 4.4e-98 362.1 237 74.3
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 6.4e-97 358.2 317 56.5
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.4e-96 357.1 321 57.9
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 1.8e-96 356.7 330 54.8
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 3.0e-94 349.4 222 71.2
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 5.0e-94 348.6 253 68.8
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 3.3e-93 345.9 326 56.1
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 1.2e-92 344.0 236 70.3
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 6.2e-92 341.7 325 52.9
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 8.9e-91 337.8 328 55.2
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 1.0e-86 324.3 312 55.4
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.3e-86 323.2 312 53.5
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.5e-85 319.7 213 70.0
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.7e-79 299.7 310 49.4
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 3.0e-78 296.2 310 48.7
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.1e-78 295.4 317 47.3
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 8.6e-78 294.7 209 66.5
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 3.6e-76 289.3 323 50.2
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.5e-74 283.9 172 73.3
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 5.8e-74 282.0 317 48.9
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 6.4e-73 278.5 315 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.9e-72 276.9 238 55.9
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.9e-72 276.9 251 53.0
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 8.6e-70 268.1 248 56.0
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.4e-64 248.8 172 72.7
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 9.3e-64 248.1 156 71.8
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.6e-63 247.3 174 70.1
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.4e-59 234.2 226 50.0
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.1e-56 224.6 315 41.0
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.7e-55 219.9 244 51.6
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 2.6e-50 203.4 130 71.5
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.4e-48 197.6 143 62.9
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.6e-47 194.1 223 45.7
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.6e-42 176.8 147 55.8
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 3.4e-42 176.4 143 62.2
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 7.6e-42 175.3 234 43.2
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 2.7e-39 166.8 317 35.6
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 1.0e-38 164.9 440 28.6
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 2.1e-36 157.1 236 39.0
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 9.0e-35 151.8 111 63.1
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.1e-31 140.6 172 47.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 1.1e-21 108.2 61 78.7
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.8e-19 100.9 53 83.0
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 3.2e-16 90.1 58 65.5
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 5.5e-16 89.4 67 56.7
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 3.6e-15 86.7 51 76.5
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 2.8e-12 77.0 37 86.5
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 5.3e-11 72.8 47 63.8
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 3.2e-08 63.5 31 87.1
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 2.1e-07 60.8 39 74.4
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.6e-07 60.1 36 69.4
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 8.0e-07 58.9 43 62.8
Cfa025678 Carpinus fangiana HOM05D005657 ORTHO05D122708 5.2e-06 56.2 175 29.1


User provided reference genes

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