Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 2183.7 1085 100.0
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 2161.3 1078 99.8
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1900.2 1078 87.5
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1882.1 1081 85.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1877.4 1081 85.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1875.9 1081 85.3
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1850.9 1080 85.5
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1710.3 1082 78.3
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1705.3 1084 77.9
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1703.0 1087 76.9
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1701.4 1067 78.8
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1695.2 1085 78.1
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1689.9 1084 77.5
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1689.1 1090 77.3
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1687.9 1086 76.6
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1085 77.6
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1684.8 1085 77.0
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1680.6 1084 76.4
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1679.8 1085 77.1
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1087 76.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1085 77.1
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1087 76.9
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1672.5 1086 76.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1671.0 1083 76.3
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1670.2 1083 76.5
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1668.7 1084 75.7
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1668.3 1087 76.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1665.2 1084 76.1
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1088 76.4
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1663.3 1085 75.9
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1662.9 1084 76.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1660.6 1085 76.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1659.8 1084 76.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1083 76.1
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1654.8 1086 75.8
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1083 76.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1646.3 1086 75.1
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1644.4 1087 74.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1643.6 1088 74.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1642.1 1084 75.0
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1641.7 1086 75.3
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1639.0 1084 75.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1638.6 1084 74.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1630.9 1096 73.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1630.2 1083 74.5
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1625.1 1086 74.1
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1622.8 1088 74.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1086 73.8
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1621.7 1086 73.8
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1619.4 1088 74.0
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1618.6 1082 74.1
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1086 74.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1612.8 1114 71.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1082 72.6
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1169 70.3
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1082 72.8
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1167 70.2
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1595.1 1090 72.2
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1066 73.4
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1582.0 1085 72.1
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1083 71.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1081 72.5
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1082 72.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1096 71.4
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1572.8 1082 71.9
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1572.8 1083 72.1
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1572.0 1082 71.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1083 72.0
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1081 71.6
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1081 71.5
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1081 71.5
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1568.1 1084 71.4
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1084 71.0
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1084 71.1
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 786 99.0
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1086 71.4
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1560.8 1083 71.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1560.4 1081 71.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1082 71.3
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1081 71.1
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1088 71.4
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1081 71.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1553.1 1085 70.6
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1112 70.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 1085 70.1
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1112 68.7
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1095 70.7
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1086 71.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1016 75.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1084 70.4
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1082 69.6
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1098 69.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1526.9 1088 69.9
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1095 70.0
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1520.0 1091 69.5
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 1084 69.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1518.1 1085 69.3
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 1154 66.4
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1510.0 1057 70.4
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1506.9 1083 70.0
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1082 69.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1106 67.5
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1482.2 995 75.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1475.7 1107 68.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1463.4 1002 72.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1454.5 979 72.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1434.9 1112 65.6
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1429.8 1079 68.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1426.8 1084 65.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1426.4 1083 66.7
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1394.0 1107 63.1
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1329.7 1082 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1187.9 1089 54.5
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1151.3 1085 54.2
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 689 81.3
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 1086 52.8
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1130.9 1127 52.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1130.5 1086 52.8
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1125.2 717 77.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1114.8 671 80.9
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 8.4e-306 1053.9 760 69.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 5.4e-297 1024.6 609 83.7
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 8.2e-285 984.2 844 59.8
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.1e-272 941.4 815 60.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.6e-246 856.3 961 48.6
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 7.5e-246 854.7 628 68.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 8.6e-234 814.7 499 78.8
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-216 757.3 636 62.7
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.7e-210 737.3 973 45.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.5e-169 600.5 616 53.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.4e-164 584.7 430 68.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 3.7e-144 516.9 303 80.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.2e-132 477.2 239 98.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.5e-129 468.4 313 72.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 9.1e-127 459.1 389 61.7
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.5e-84 318.2 297 56.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 6.9e-66 256.9 136 85.3
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.2e-59 233.8 205 62.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 2.3e-45 188.7 138 63.0
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 7.7e-41 173.7 105 75.2
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.2e-35 155.6 162 53.7
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.2e-30 139.8 156 48.1
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.6e-30 138.3 152 52.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.0e-29 136.7 72 86.1
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.0e-25 122.5 97 62.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.9e-24 118.6 88 64.8
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 8.5e-16 90.5 145 40.7
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.6e-14 85.1 90 47.8
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.8e-13 82.8 45 88.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.7e-09 68.9 76 42.1
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 4.5e-09 68.2 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 3.3e-07 62.0 39 74.4


User provided reference genes

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