Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 6.7e-69 264.2 168 100.0
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.3e-67 260.0 167 99.4
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 3.9e-53 211.8 127 88.2
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 2.5e-52 209.1 108 100.0
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 1.5e-49 199.9 115 90.4
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 3.3e-44 182.2 138 73.9
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 4.8e-43 178.3 140 70.0
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 4.8e-43 178.3 140 70.0
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 1.1e-42 177.2 138 69.6
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 1.2e-41 173.7 129 71.3
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 2.6e-41 172.6 140 68.6
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 3.8e-40 168.7 117 76.1
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 6.5e-40 167.9 121 73.6
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 6.5e-40 167.9 143 68.5
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 8.5e-40 167.5 137 70.1
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 1.1e-39 167.2 127 72.4
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 2.5e-39 166.0 111 76.6
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 3.2e-39 165.6 119 72.3
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 4.2e-39 165.2 132 70.5
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 5.5e-39 164.9 146 65.8
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 9.4e-39 164.1 124 73.4
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 1.2e-38 163.7 121 71.9
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 1.6e-38 163.3 128 71.9
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 4.7e-38 161.8 138 67.4
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 6.1e-38 161.4 139 64.0
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 6.1e-38 161.4 129 71.3
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 8.0e-38 161.0 139 64.7
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 8.0e-38 161.0 127 71.7
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 8.0e-38 161.0 105 78.1
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 8.0e-38 161.0 139 68.3
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 1.4e-37 160.2 109 74.3
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 1.4e-37 160.2 137 67.2
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 1.4e-37 160.2 123 70.7
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 1.4e-37 160.2 138 65.2
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 2.3e-37 159.5 153 64.1
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 4.0e-37 158.7 105 75.2
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 4.0e-37 158.7 109 72.5
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 8.8e-37 157.5 138 62.3
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.1e-36 157.1 119 71.4
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 1.1e-36 157.1 127 66.9
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 1.5e-36 156.8 130 66.9
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 2.6e-36 156.0 104 74.0
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 2.6e-36 156.0 104 74.0
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 2.6e-36 156.0 104 74.0
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 2.6e-36 156.0 111 74.8
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 2.6e-36 156.0 125 70.4
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 2.6e-36 156.0 104 75.0
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 7.5e-36 154.5 119 68.9
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 7.5e-36 154.5 143 62.2
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 7.5e-36 154.5 112 74.1
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 9.7e-36 154.1 133 66.9
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 9.7e-36 154.1 138 65.2
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 9.7e-36 154.1 127 66.9
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.3e-35 153.7 130 69.2
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 1.7e-35 153.3 119 72.3
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 1.7e-35 153.3 112 70.5
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 1.7e-35 153.3 112 75.0
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 2.2e-35 152.9 139 62.6
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 2.8e-35 152.5 143 59.4
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 2.8e-35 152.5 127 66.1
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 3.7e-35 152.1 140 66.4
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 4.8e-35 151.8 95 81.1
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 4.8e-35 151.8 134 64.9
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 8.2e-35 151.0 133 63.9
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 8.2e-35 151.0 124 69.4
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 1.4e-34 150.2 127 65.4
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 1.8e-34 149.8 106 74.5
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 3.1e-34 149.1 139 59.7
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 7.0e-34 147.9 121 71.9
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 9.1e-34 147.5 107 70.1
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 9.1e-34 147.5 132 61.4
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 2.7e-33 146.0 97 76.3
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 2.7e-33 146.0 116 67.2
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 7.7e-33 144.4 107 69.2
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 7.7e-33 144.4 127 66.1
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 1.0e-32 144.1 126 65.1
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 2.2e-32 142.9 140 60.7
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 2.2e-32 142.9 138 58.0
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 2.9e-32 142.5 127 63.8
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 2.9e-32 142.5 126 64.3
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 8.5e-32 141.0 102 75.5
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 1.1e-31 140.6 107 71.0
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 1.5e-31 140.2 144 56.9
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 4.2e-31 138.7 142 54.9
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 9.4e-31 137.5 94 72.3
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 1.2e-30 137.1 139 54.7
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 2.1e-30 136.3 133 61.7
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 4.7e-30 135.2 96 71.9
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 4.7e-30 135.2 160 55.6
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 4.7e-30 135.2 91 74.7
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 4.7e-30 135.2 126 61.9
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 6.1e-30 134.8 92 77.2
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 1.8e-29 133.3 114 64.9
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 6.8e-29 131.3 86 74.4
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 6.8e-29 131.3 136 58.8
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 8.8e-29 131.0 121 61.2
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 8.8e-29 131.0 116 61.2
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 1.2e-28 130.6 85 76.5
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 9.8e-28 127.5 111 65.8
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 9.8e-28 127.5 98 70.4
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 4.8e-27 125.2 139 52.5
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 1.1e-26 124.0 135 55.6
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 1.0e-24 117.5 104 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 3.8e-24 115.5 124 55.6
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 5.0e-24 115.2 91 63.7
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 4.2e-23 112.1 115 53.9
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 1.6e-22 110.2 139 48.9
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 5.7e-20 101.7 109 56.9
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 2.2e-19 99.8 62 87.1
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 4.9e-19 98.6 107 50.5
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 2.9e-16 89.4 111 44.1
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 3.3e-15 85.9 102 45.1
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.4e-10 69.7 57 64.9
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.2e-10 69.3 59 62.7
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.6e-09 67.0 57 63.2
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.6e-09 67.0 57 63.2
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.6e-09 67.0 57 63.2
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 3.9e-08 62.4 90 35.6
AUR62009752 Chenopodium quinoa HOM05D006639 ORTHO05D008339 9.5e-07 57.8 48 58.3
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 1.6e-06 57.0 62 53.2
CANSAT11G2562 Cannabis sativa HOM05D000297 ORTHO05D000193 2.1e-06 56.6 104 33.7
Sc02g0002040 Simmondsia chinensis HOM05D000297 ORTHO05D000193 2.1e-06 56.6 107 30.8
HanXRQChr14g0445301 Helianthus annuus HOM05D000297 ORTHO05D000193 4.7e-06 55.5 90 30.0
SGA_v2.0_scaffold70G23513 Striga asiatica HOM05D000297 ORTHO05D000193 4.7e-06 55.5 106 33.0
Ca_06394_v3 Cicer arietinum L. HOM05D000297 ORTHO05D000193 6.2e-06 55.1 105 32.4
COL.COLO4_23757 Corchorus olitorius HOM05D000297 ORTHO05D000193 6.2e-06 55.1 99 31.3
RcHm_v2.0_Chr1g0364211 Rosa chinensis HOM05D000297 ORTHO05D000193 6.2e-06 55.1 111 31.5
TWI63G0281 Tripterygium wilfordii HOM05D000297 ORTHO05D000193 6.2e-06 55.1 99 31.3
vmacro12081 Vaccinium macrocarpon HOM05D000297 ORTHO05D000193 6.2e-06 55.1 98 32.7
DCAR_015270 Daucus carota HOM05D000297 ORTHO05D000193 8.0e-06 54.7 108 30.6
ECA236G2090 Erigeron canadensis HOM05D000297 ORTHO05D000193 8.0e-06 54.7 95 32.6
FvH4_3g29360 Fragaria vesca HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7
FAN11G1502 Fragaria x ananassa HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7
FAN16G1399 Fragaria x ananassa HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7
FAN21G0154 Fragaria x ananassa HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7
FAN25G0374 Fragaria x ananassa HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7
MBI19_g14896_MAGBIO Magnolia biondii HOM05D000297 ORTHO05D000193 8.0e-06 54.7 105 33.3
MD11G1200400 Malus domestica HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7
Prupe.2G219500 Prunus persica HOM05D000297 ORTHO05D000193 8.0e-06 54.7 111 30.6
Prupe.4G242700 Prunus persica HOM05D000297 ORTHO05D000193 8.0e-06 54.7 102 32.4
RcHm_v2.0_Chr5g0053731 Rosa chinensis HOM05D000297 ORTHO05D000193 8.0e-06 54.7 104 31.7


User provided reference genes

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