Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 2.7e-211 738.4 374 100.0
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.4e-206 721.5 374 96.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 2.0e-190 669.1 352 96.3
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 7.6e-182 640.6 366 91.0
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 2.6e-174 615.5 374 84.0
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 2.9e-165 585.5 377 78.2
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 5.9e-158 561.2 380 76.1
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 2.1e-131 473.0 344 68.6
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.0e-125 454.1 361 64.0
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.9e-124 449.9 353 64.0
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 6.1e-123 444.9 356 64.0
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 6.8e-122 441.4 350 62.6
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 3.4e-121 439.1 370 59.7
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.8e-121 438.3 340 62.1
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.8e-121 438.3 340 62.1
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 5.8e-121 438.3 357 61.3
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.7e-120 436.8 357 62.2
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.7e-120 436.8 358 61.5
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.2e-120 436.4 338 62.7
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 2.9e-120 436.0 357 61.6
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 4.9e-120 435.3 354 62.4
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.4e-119 433.7 341 63.3
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 1.9e-119 433.3 358 63.1
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.1e-119 432.2 336 64.6
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 5.4e-119 431.8 336 64.3
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 5.4e-119 431.8 345 60.9
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 9.2e-119 431.0 339 63.7
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.5e-118 429.1 337 63.2
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.6e-118 428.7 358 60.6
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 6.0e-118 428.3 344 63.7
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 7.8e-118 427.9 338 62.4
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 7.8e-118 427.9 359 61.0
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.0e-117 427.6 348 60.3
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 2.3e-117 426.4 359 59.1
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 3.9e-117 425.6 341 61.9
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 8.6e-117 424.5 355 60.0
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 1.1e-116 424.1 355 59.7
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 1.1e-116 424.1 344 61.9
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.5e-116 423.7 339 62.5
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 3.3e-116 422.5 355 59.7
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 5.6e-116 421.8 338 62.7
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 7.3e-116 421.4 351 62.7
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 9.5e-116 421.0 341 62.2
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.2e-115 420.6 353 60.3
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 3.6e-115 419.1 337 61.7
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 4.7e-115 418.7 362 60.8
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 8.0e-115 417.9 357 58.0
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 5.2e-114 415.2 362 58.8
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.5e-113 413.7 357 58.8
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 2.0e-113 413.3 351 58.4
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 3.4e-113 412.5 342 59.4
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 4.4e-113 412.1 359 59.9
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 4.4e-113 412.1 353 59.2
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 7.5e-113 411.4 357 58.5
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 7.5e-113 411.4 341 61.3
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 9.8e-113 411.0 346 59.8
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 1.3e-112 410.6 344 59.6
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 2.2e-112 409.8 338 62.4
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 2.9e-112 409.5 359 60.2
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 2.9e-112 409.5 335 63.0
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 6.4e-112 408.3 346 60.1
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 1.4e-111 407.1 345 58.0
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 3.2e-111 406.0 367 57.8
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 4.1e-111 405.6 339 60.8
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 5.4e-111 405.2 341 59.8
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 5.4e-111 405.2 347 60.8
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 5.4e-111 405.2 358 59.8
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 9.2e-111 404.4 353 60.1
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 1.2e-110 404.1 346 58.4
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 3.5e-110 402.5 339 59.9
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 4.6e-110 402.1 347 60.2
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.0e-109 401.0 353 57.8
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.3e-109 400.6 318 63.2
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 1.7e-109 400.2 343 60.9
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.3e-109 399.8 323 60.1
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.3e-109 399.8 338 58.6
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 8.6e-109 397.9 353 59.8
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 2.5e-108 396.4 342 59.6
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.5e-108 396.4 362 57.5
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.8e-107 392.9 353 58.4
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 4.0e-106 389.0 333 57.4
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.5e-105 387.1 347 56.5
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 7.5e-105 384.8 381 53.8
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 4.1e-103 379.0 336 59.5
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 9.2e-103 377.9 305 62.6
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 3.5e-102 375.9 345 55.9
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 7.8e-102 374.8 303 60.7
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.3e-101 373.2 370 54.3
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 4.7e-99 365.5 302 59.6
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 3.1e-98 362.8 298 61.4
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 4.0e-98 362.5 362 53.9
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.5e-97 360.5 260 68.5
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.0e-93 347.8 353 52.1
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 4.9e-88 328.9 346 52.6
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.1e-84 317.8 295 55.9
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.5e-84 317.4 272 60.7
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 9.9e-81 304.7 335 50.1
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.9e-79 300.4 267 57.7
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 3.9e-77 292.7 336 48.2
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 2.2e-72 276.9 261 55.9
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 1.9e-71 273.9 261 54.0
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 1.6e-70 270.8 453 38.0
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.1e-70 270.4 304 50.7
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 7.9e-70 268.5 322 49.1
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.9e-68 263.8 479 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 4.8e-67 259.2 337 45.1
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 4.8e-67 259.2 304 50.0
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 5.5e-63 245.7 236 56.4
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 2.1e-62 243.8 351 40.2
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 3.5e-62 243.0 212 59.4
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 6.9e-58 228.8 230 54.3
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.5e-55 220.3 224 51.8
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 2.1e-54 217.2 199 57.3
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 2.0e-49 200.7 126 73.8
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 1.7e-48 197.6 371 35.6
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 9.7e-44 181.8 168 57.1
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 3.7e-43 179.9 171 55.0
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 5.5e-39 166.0 127 61.4
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 2.7e-38 163.7 425 31.5
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 2.3e-37 160.6 494 27.9
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.5e-36 157.9 85 85.9
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 3.3e-36 156.8 132 61.4
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 2.8e-35 153.7 122 58.2
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-31 141.7 184 47.3
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 4.2e-31 139.8 115 63.5
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 4.2e-23 113.2 96 59.4
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.4e-21 108.2 110 55.5
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.3e-16 91.7 61 70.5
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 5.0e-16 89.7 65 63.1
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 1.5e-07 61.6 65 47.7
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 5.6e-07 59.7 105 34.3


User provided reference genes

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