Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.7e-120 436.0 223 100.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.5e-120 434.1 223 99.6
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.3e-116 421.8 223 96.9
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 5.7e-100 367.9 223 83.9
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 7.0e-98 360.9 223 82.1
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 2.6e-97 359.0 223 83.0
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 7.2e-95 350.9 222 79.3
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.2e-94 350.1 223 80.3
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 7.5e-92 340.9 226 78.3
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 7.5e-92 340.9 224 77.7
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.7e-91 338.6 226 79.2
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 3.7e-91 338.6 226 77.0
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.8e-91 338.2 223 75.3
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.2e-91 337.4 225 76.0
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.4e-90 336.7 223 75.3
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-90 336.7 224 77.2
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.4e-90 335.9 224 77.2
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.1e-90 335.5 218 76.1
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.1e-90 335.1 231 75.8
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.1e-90 335.1 222 76.1
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 5.3e-90 334.7 224 75.9
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.6e-89 333.2 211 80.1
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.5e-89 332.0 224 77.2
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 3.5e-89 332.0 223 76.2
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 5.9e-89 331.3 225 76.0
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.9e-89 331.3 224 77.2
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 7.7e-89 330.9 224 76.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.7e-89 330.9 224 77.2
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.0e-88 330.5 225 75.6
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.0e-88 330.5 212 79.7
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.0e-88 330.5 230 75.2
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.2e-88 329.3 224 76.3
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.9e-88 328.9 224 73.2
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.9e-88 328.9 224 73.2
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.0e-88 328.2 225 75.1
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.0e-88 328.2 225 75.1
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 8.5e-88 327.4 226 73.0
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.5e-87 325.9 217 76.5
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.5e-87 325.9 223 74.9
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.2e-87 325.5 228 73.2
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 5.5e-87 324.7 221 73.8
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 7.2e-87 324.3 221 74.2
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.7e-86 321.6 225 74.2
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 4.7e-86 321.6 225 74.2
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 8.0e-86 320.9 325 56.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 5.2e-85 318.2 227 71.4
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 6.8e-85 317.8 221 72.4
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.2e-84 317.0 224 72.3
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.5e-84 316.6 229 71.6
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 2.0e-84 316.2 227 70.9
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.4e-84 315.5 227 70.0
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 4.4e-84 315.1 219 72.1
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.4e-84 315.1 227 70.9
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 9.8e-84 313.9 229 70.7
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 9.8e-84 313.9 225 70.2
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.3e-83 313.5 228 70.2
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-83 313.2 225 71.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.7e-83 313.2 225 71.1
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.8e-83 312.4 225 70.2
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.8e-83 311.6 218 72.0
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 6.3e-83 311.2 225 70.2
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 6.3e-83 311.2 226 69.5
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 8.3e-83 310.8 225 70.2
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.4e-82 310.1 217 71.9
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.4e-82 310.1 225 71.6
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.8e-82 309.7 216 70.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.4e-82 309.3 225 71.6
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 3.1e-82 308.9 224 69.6
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 4.1e-82 308.5 218 69.7
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 9.1e-82 307.4 226 69.5
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.2e-81 307.0 218 71.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.0e-81 306.2 253 66.4
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 5.9e-81 304.7 226 67.7
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.7e-81 304.3 224 68.8
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.3e-80 303.5 218 68.8
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.8e-80 302.0 226 65.0
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 6.5e-80 301.2 218 71.1
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.5e-79 300.1 219 69.4
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.5e-79 300.1 225 66.2
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.5e-79 300.1 219 70.8
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-79 300.1 227 65.2
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.9e-79 299.7 196 75.0
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.2e-79 298.9 228 68.4
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 7.2e-79 297.7 221 68.8
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 7.2e-79 297.7 220 67.3
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 9.4e-79 297.4 221 68.3
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.6e-78 296.6 225 67.1
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.1e-78 296.2 211 66.4
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.1e-78 296.2 232 63.8
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 2.7e-78 295.8 223 67.3
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.6e-78 295.4 203 72.4
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 8.0e-78 294.3 232 63.8
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 8.0e-78 294.3 232 63.8
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 4.4e-76 288.5 224 62.9
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 7.5e-76 287.7 212 66.0
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.7e-75 286.6 223 63.7
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 2.2e-75 286.2 221 65.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 4.9e-75 285.0 217 67.3
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 8.3e-75 284.3 221 63.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.8e-74 283.1 225 65.8
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.4e-74 282.7 225 66.7
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 3.1e-74 282.3 213 65.7
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.5e-73 278.5 220 62.7
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 5.9e-73 278.1 357 47.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 7.7e-73 277.7 225 65.8
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.7e-72 276.6 216 65.7
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.7e-72 276.6 222 62.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.7e-72 276.6 206 65.5
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.3e-72 276.2 222 62.2
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.9e-72 275.8 210 67.6
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.0e-72 275.0 219 64.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 7.3e-71 271.2 227 61.7
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.1e-70 269.6 221 61.1
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.8e-70 269.2 213 62.9
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 4.7e-70 268.5 221 60.6
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.0e-69 267.3 209 61.2
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.0e-69 267.3 268 54.9
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.4e-69 266.9 223 61.4
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 9.2e-66 254.2 218 56.4
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 9.2e-66 254.2 208 60.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 4.6e-65 251.9 219 57.1
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.5e-63 246.9 222 59.5
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.3e-61 239.6 153 77.8
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.4e-60 235.7 171 71.3
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 5.8e-60 235.0 152 75.7
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 4.9e-59 231.9 153 73.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 3.9e-56 222.2 152 72.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 4.7e-54 215.3 152 71.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 8.9e-53 211.1 139 74.1
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.1e-50 204.1 127 80.3
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 3.5e-49 199.1 202 56.9
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 6.0e-49 198.4 162 61.1
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.5e-47 193.7 130 73.1
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.6e-46 190.3 222 50.5
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 5.8e-44 181.8 107 83.2
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.9e-42 176.8 111 80.2
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.2e-41 174.1 111 75.7
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.2e-41 174.1 111 75.7
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 4.3e-39 165.6 117 71.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 6.2e-38 161.8 95 82.1
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 6.9e-37 158.3 117 70.1
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.9e-35 152.9 112 66.1
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.4e-34 149.8 191 39.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.9e-31 140.2 121 63.6
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.2e-27 126.7 144 50.7
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 4.9e-27 125.6 84 71.4
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.2e-26 122.5 106 61.3
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.5e-23 113.2 128 53.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.5e-20 104.0 81 64.2
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 4.8e-14 82.4 57 70.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 5.8e-12 75.5 61 60.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.3e-08 64.3 77 48.1
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 3.3e-07 59.7 48 60.4


User provided reference genes

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