Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.5e-51 203.8 133 100.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.2e-50 201.4 133 99.2
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.7e-47 191.0 133 95.5
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.8e-46 188.0 133 90.2
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-45 186.8 133 91.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-43 180.3 102 89.2
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.6e-33 145.2 133 72.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 2.3e-32 142.5 136 79.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.6e-28 129.8 136 66.9
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.6e-28 129.8 88 79.5
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-23 113.2 140 69.3
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 4.8e-22 108.2 123 52.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 8.3e-22 107.5 129 55.8
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.4e-21 106.7 92 59.8
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.8e-21 106.3 109 56.9
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.4e-21 105.9 85 67.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.4e-21 105.9 105 61.9
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.4e-21 105.9 140 65.7
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 7.0e-21 104.4 104 58.7
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 7.0e-21 104.4 104 58.7
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 7.0e-21 104.4 104 58.7
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 7.0e-21 104.4 125 65.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 9.1e-21 104.0 105 60.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 9.1e-21 104.0 105 58.1
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.1e-21 104.0 140 65.0
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 9.1e-21 104.0 95 63.2
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.0e-20 102.8 100 60.0
Gohir.D08G261800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.5e-20 102.1 70 80.0
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.5e-20 102.1 68 73.5
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 4.5e-20 101.7 90 80.0
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 4.5e-20 101.7 154 59.7
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.5e-20 101.7 105 58.1
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 7.7e-20 100.9 56 83.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 7.7e-20 100.9 56 83.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 7.7e-20 100.9 56 83.9
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.0e-19 100.5 101 55.4
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.3e-19 100.1 104 58.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.7e-19 99.8 115 53.9
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.7e-19 99.8 115 53.9
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.7e-19 99.8 95 64.2
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.7e-19 99.8 143 60.8
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.7e-19 99.8 108 60.2
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.7e-19 99.8 163 55.2
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.3e-19 99.4 58 81.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.3e-19 99.4 124 67.7
Gorai.004G279900 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.9e-19 99.0 132 52.3
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 5.0e-19 98.2 84 84.5
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 1.5e-18 96.7 117 51.3
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.9e-18 96.3 127 49.6
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.3e-18 95.5 87 83.9
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 3.3e-18 95.5 79 70.9
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.2e-18 95.1 116 59.5
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.2e-18 95.1 116 59.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 7.2e-18 94.4 52 84.6
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.2e-17 93.6 111 55.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.8e-17 92.4 57 84.2
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 3.6e-17 92.0 86 64.0
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 3.6e-17 92.0 58 72.4
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 4.7e-17 91.7 133 50.4
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 4.7e-17 91.7 125 48.8
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.0e-17 90.9 99 55.6
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 8.0e-17 90.9 87 60.9
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.0e-16 90.5 50 96.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.8e-16 89.7 90 57.8
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.8e-16 89.7 85 57.6
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.8e-16 89.7 58 75.9
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.3e-16 89.4 87 57.5
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 2.3e-16 89.4 58 79.3
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 3.0e-16 89.0 94 60.6
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.0e-16 89.0 43 93.0
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 4.0e-16 88.6 58 74.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 4.0e-16 88.6 57 84.2
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.2e-16 88.2 103 57.3
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 6.8e-16 87.8 140 60.0
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.8e-16 87.8 104 53.8
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 8.9e-16 87.4 58 84.5
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 8.9e-16 87.4 58 84.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.5e-15 86.7 80 58.8
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.5e-15 86.7 107 56.1
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.6e-15 85.9 89 55.1
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 2.6e-15 85.9 49 81.6
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.4e-15 85.1 57 84.2
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 5.7e-15 84.7 68 60.3
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 9.8e-15 84.0 102 55.9
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 9.8e-15 84.0 44 88.6
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 9.8e-15 84.0 88 56.8
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 9.8e-15 84.0 58 72.4
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.3e-14 83.6 86 57.0
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.3e-14 83.6 79 84.8
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.7e-14 83.2 44 86.4
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.2e-14 82.8 61 77.0
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 2.2e-14 82.8 93 54.8
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.2e-14 82.8 50 74.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.2e-14 82.8 50 74.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 8.3e-14 80.9 116 57.8
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 8.3e-14 80.9 87 55.2
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.4e-13 80.1 50 86.0
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.8e-13 79.7 152 53.3
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.8e-13 79.7 43 83.7
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.8e-13 79.7 56 67.9
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.8e-13 79.7 136 58.1
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.8e-13 79.7 62 64.5
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.2e-13 79.0 56 66.1
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.1e-13 78.6 108 46.3
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 5.4e-13 78.2 147 55.8
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 7.0e-13 77.8 80 56.2
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 7.0e-13 77.8 56 67.9
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.6e-12 76.6 82 56.1
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.7e-12 75.9 38 84.2
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 2.7e-12 75.9 42 81.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.5e-12 75.5 91 49.5
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 5.9e-12 74.7 79 74.7
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 7.8e-12 74.3 85 55.3
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.0e-11 73.9 79 55.7
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.0e-11 73.9 87 49.4
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.3e-11 73.6 88 52.3
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.3e-11 73.6 81 55.6
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.3e-11 73.6 42 81.0
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.7e-11 73.2 57 64.9
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 3.9e-11 72.0 36 88.9
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 3.9e-11 72.0 88 52.3
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 8.6e-11 70.9 62 58.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 8.6e-11 70.9 62 58.1
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.1e-10 70.5 35 82.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.1e-10 70.5 96 49.0
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.5e-10 70.1 40 80.0
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.9e-10 69.7 35 82.9
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 3.3e-10 68.9 108 44.4
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 7.3e-10 67.8 69 78.3
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 4.7e-09 65.1 161 36.0
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 2.2e-06 56.2 42 73.8
Oeu033500.1 Olea europaea HOM05D005853 ORTHO05D007308 6.4e-06 54.7 32 90.6
Actinidia21670 Actinidia chinensis HOM05D005853 ORTHO05D007308 8.3e-06 54.3 83 39.8


User provided reference genes

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