Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.5e-95 351.7 184 100.0
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-90 335.9 183 95.6
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.4e-90 334.7 184 96.2
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.8e-90 333.6 184 96.2
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-89 333.2 184 95.1
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-89 332.4 184 95.7
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-89 332.0 184 96.2
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.9e-89 331.3 184 95.1
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.4e-89 330.9 184 95.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.4e-88 329.7 184 95.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 8.0e-84 313.9 184 92.4
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-78 295.0 184 87.5
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-68 263.1 184 82.1
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.4e-64 250.0 198 70.7
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 9.3e-64 247.3 199 69.8
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.3e-64 247.3 133 94.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.3e-64 247.3 133 94.7
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-62 240.7 198 69.7
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.8e-60 235.0 198 68.2
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 2.4e-59 232.6 198 67.7
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 3.4e-58 228.8 198 66.2
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 2.5e-45 186.0 200 55.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.0e-41 174.1 203 51.7
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.7e-41 173.3 194 53.1
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.7e-41 173.3 144 66.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 6.5e-41 171.4 198 52.5
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.3e-38 163.7 193 51.8
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 5.1e-38 161.8 234 45.3
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 5.1e-38 161.8 194 50.5
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 6.2e-36 154.8 190 52.1
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 8.2e-36 154.5 197 50.3
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.8e-35 153.3 188 51.6
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.3e-35 151.8 195 51.8
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 6.9e-35 151.4 195 51.3
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.9e-35 151.4 195 51.3
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 6.9e-35 151.4 193 49.2
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.6e-34 149.4 195 50.8
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.0e-33 147.5 185 47.6
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.7e-33 146.7 195 50.8
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 6.5e-33 144.8 196 47.4
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 1.1e-32 144.1 162 54.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.5e-32 142.9 189 48.7
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.2e-32 142.5 187 44.9
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 5.5e-32 141.7 199 49.2
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 9.3e-32 141.0 177 45.8
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 6.1e-31 138.3 172 48.8
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.3e-30 137.1 207 46.4
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.3e-30 137.1 186 46.2
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.3e-30 136.3 194 43.8
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.0e-30 136.0 194 45.9
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.0e-30 136.0 188 45.7
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 8.7e-30 134.4 194 43.8
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 8.7e-30 134.4 181 45.3
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.5e-29 133.7 194 43.3
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 7.4e-29 131.3 202 44.1
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 9.7e-29 131.0 201 42.3
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.3e-28 130.6 194 42.8
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 8.2e-28 127.9 220 42.3
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 3.1e-27 125.9 186 43.0
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 4.1e-27 125.6 192 43.8
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 5.3e-27 125.2 177 41.2
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 9.0e-27 124.4 193 42.5
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 1.2e-26 124.0 193 42.0
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.5e-26 123.6 172 41.9
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 2.0e-26 123.2 159 47.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.0e-26 123.2 193 38.9
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 2.0e-26 123.2 184 42.4
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.6e-26 122.9 195 43.1
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.6e-26 122.9 199 42.7
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 2.6e-26 122.9 183 40.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 2.6e-26 122.9 188 41.5
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 7.7e-26 121.3 195 44.6
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.3e-25 120.6 150 48.7
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.3e-25 120.6 193 43.5
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-25 120.6 174 42.0
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.3e-25 120.6 202 40.6
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.7e-25 120.2 181 41.4
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.7e-25 120.2 180 41.7
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 2.9e-25 119.4 189 41.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 2.9e-25 119.4 189 41.8
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.8e-25 119.0 188 39.9
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 5.0e-25 118.6 188 39.9
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-24 116.7 187 41.7
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-24 116.7 62 93.5
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-24 116.7 62 93.5
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.5e-24 116.3 188 43.1
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-24 116.3 191 40.8
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 2.5e-24 116.3 172 44.2
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 7.2e-24 114.8 193 42.0
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 9.4e-24 114.4 211 43.1
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.6e-23 113.6 181 41.4
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.7e-23 112.8 175 42.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.6e-23 112.1 183 41.5
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 6.1e-23 111.7 206 40.8
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 7.9e-23 111.3 181 40.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.0e-22 110.9 185 38.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 3.0e-22 109.4 198 38.9
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.1e-22 108.6 177 40.7
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 8.8e-22 107.8 230 36.5
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.5e-21 106.3 186 39.8
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.5e-21 106.3 186 38.2
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.5e-21 106.3 182 43.4
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.3e-21 105.9 186 38.2
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 7.4e-21 104.8 185 39.5
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 9.7e-21 104.4 154 42.2
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.3e-20 104.0 191 40.3
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.7e-20 103.6 127 48.8
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.2e-20 103.2 171 37.4
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.7e-20 102.4 197 39.1
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 3.7e-20 102.4 197 39.1
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-19 99.8 178 40.4
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 2.4e-19 99.8 178 40.4
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.4e-19 99.8 152 38.2
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.4e-19 99.8 189 39.7
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 2.4e-19 99.8 198 39.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 4.1e-19 99.0 195 36.9
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 9.1e-19 97.8 178 40.4
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.2e-18 97.4 166 38.6
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 1.2e-18 97.4 195 35.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.5e-18 97.1 171 41.5
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 2.6e-18 96.3 174 37.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.6e-18 96.3 189 37.6
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 5.9e-18 95.1 179 34.6
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-17 94.4 179 41.9
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 2.2e-17 93.2 196 35.7
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 2.9e-17 92.8 177 40.1
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 6.5e-17 91.7 178 38.2
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 6.5e-17 91.7 83 62.7
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 8.5e-17 91.3 133 41.4
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-16 90.9 189 38.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.4e-16 90.5 179 34.6
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.4e-16 90.5 179 34.6
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 3.2e-16 89.4 191 37.2
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 5.5e-16 88.6 137 42.3
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 5.5e-16 88.6 92 56.5
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 9.4e-16 87.8 149 40.3
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-15 87.4 183 35.5
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-15 87.4 181 36.5
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 1.2e-15 87.4 183 35.5
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-15 87.0 159 37.7
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 3.6e-15 85.9 187 37.4
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 4.7e-15 85.5 180 36.7
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-15 84.7 183 36.1
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.4e-14 84.0 177 36.7
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.4e-14 84.0 182 34.6
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.8e-14 83.6 183 35.5
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 1.8e-14 83.6 156 41.0
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 5.1e-14 82.0 183 35.0
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 5.1e-14 82.0 182 35.2
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.1e-14 82.0 208 31.7
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 6.7e-14 81.6 183 35.0
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 6.7e-14 81.6 259 28.6
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-13 80.5 158 34.8
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 1.5e-13 80.5 158 34.8
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.5e-13 80.5 90 48.9
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 7.4e-13 78.2 167 34.7
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 9.7e-13 77.8 153 36.6
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.7e-12 77.0 130 33.8
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-12 77.0 130 33.8
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.2e-12 76.6 145 37.2
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-12 75.1 125 36.0
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 8.2e-12 74.7 184 35.3
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-11 74.3 129 36.4
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.4e-11 73.9 125 36.0
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 2.4e-11 73.2 163 36.8
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.1e-11 72.8 208 30.8
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 9.1e-11 71.2 185 33.0
Hma1.2p1_0664F.1_g198920 Hydrangea macrophylla HOM05D000001 ORTHO05D004044 3.0e-06 56.2 135 33.3
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 6.7e-06 55.1 46 52.2
Lsat_1_v5_gn_8_70460 Lactuca sativa HOM05D000001 ORTHO05D004044 8.8e-06 54.7 99 38.4


User provided reference genes

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