Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-55 219.5 118 100.0
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.3e-55 219.5 118 100.0
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.0e-53 210.3 122 91.8
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.1e-41 173.3 123 76.4
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-37 159.8 118 72.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.2e-37 159.8 119 78.2
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.6e-35 150.6 119 68.1
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.6e-35 150.6 118 69.5
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 7.6e-35 150.6 118 69.5
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-33 146.7 119 72.3
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-33 146.7 119 72.3
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.1e-33 146.7 119 72.3
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.4e-33 146.4 131 72.5
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 1.6e-21 106.3 122 60.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.8e-21 105.5 115 54.8
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 2.8e-21 105.5 120 55.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 8.1e-21 104.0 89 67.4
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 8.1e-21 104.0 89 67.4
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.8e-19 97.8 89 59.6
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.2e-18 95.9 89 66.3
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 3.2e-17 92.0 117 54.7
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 7.1e-17 90.9 117 53.8
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.2e-16 90.1 93 57.0
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.3e-15 86.7 89 57.3
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.3e-15 85.9 120 47.5
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-15 85.5 120 47.5
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-15 85.5 120 47.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.0e-15 85.5 126 46.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.9e-15 85.1 115 53.0
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 5.1e-15 84.7 117 47.0
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 5.1e-15 84.7 96 52.1
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 6.7e-15 84.3 91 54.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.5e-14 82.4 125 46.4
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.3e-14 82.0 120 45.0
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 3.3e-14 82.0 124 46.8
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.3e-14 81.6 71 59.2
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.3e-13 80.1 92 52.2
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 2.1e-13 79.3 121 51.2
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 2.1e-13 79.3 121 51.2
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.8e-13 79.0 121 50.4
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 3.7e-13 78.6 140 46.4
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.7e-13 78.6 114 43.9
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 1.4e-12 76.6 97 48.5
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 3.1e-12 75.5 131 50.4
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 3.1e-12 75.5 131 45.8
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 5.3e-12 74.7 130 45.4
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 9.0e-12 73.9 87 55.2
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 9.0e-12 73.9 94 50.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.0e-11 72.8 124 43.5
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.0e-11 72.8 127 44.9
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.4e-11 72.0 124 43.5
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.5e-11 71.6 91 46.2
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.5e-11 71.6 91 46.2
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.5e-11 71.6 91 46.2
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 4.5e-11 71.6 94 46.8
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.3e-10 70.1 101 49.5
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.7e-10 69.7 107 42.1
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.7e-10 69.7 98 46.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 2.9e-10 68.9 124 41.9
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 2.9e-10 68.9 101 48.5
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 2.9e-10 68.9 94 50.0
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.9e-10 68.2 90 45.6
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.9e-10 68.2 90 45.6
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 6.4e-10 67.8 96 47.9
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 8.4e-10 67.4 123 41.5
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.4e-10 67.4 123 38.2
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.4e-09 66.6 101 46.5
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.9e-09 66.2 96 44.8
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 2.4e-09 65.9 104 44.2
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 2.4e-09 65.9 98 46.9
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.4e-09 65.9 118 42.4
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.4e-09 65.9 90 45.6
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 3.2e-09 65.5 128 42.2
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 3.2e-09 65.5 110 41.8
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 3.2e-09 65.5 106 46.2
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 3.2e-09 65.5 107 42.1
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 5.5e-09 64.7 126 40.5
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 5.5e-09 64.7 126 40.5
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 5.5e-09 64.7 126 40.5
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 5.5e-09 64.7 128 39.8
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 7.1e-09 64.3 99 45.5
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 7.1e-09 64.3 105 42.9
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 9.3e-09 63.9 101 46.5
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.2e-08 63.5 128 39.8
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-08 63.5 114 43.9
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-08 63.5 114 43.9
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 1.2e-08 63.5 101 42.6
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.2e-08 63.5 133 38.3
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-08 63.2 107 43.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.6e-08 63.2 98 45.9
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.1e-08 62.8 99 43.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.1e-08 62.8 101 45.5
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.1e-08 62.8 140 35.7
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.1e-08 62.8 123 39.0
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.7e-08 62.4 100 45.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.7e-08 62.4 100 45.0
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.5e-08 62.0 108 41.7
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 3.5e-08 62.0 95 42.1
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 4.6e-08 61.6 119 41.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 6.0e-08 61.2 120 39.2
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 7.9e-08 60.8 54 63.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.0e-07 60.5 70 51.4
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 1.0e-07 60.5 130 36.2
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.3e-07 60.1 95 40.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.3e-07 59.3 71 45.1
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 2.3e-07 59.3 114 38.6
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 3.0e-07 58.9 119 37.0
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.9e-07 58.5 97 40.2
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.9e-07 58.5 127 42.5
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 5.1e-07 58.2 135 37.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 5.1e-07 58.2 121 38.8
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 8.7e-07 57.4 93 38.7
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.5e-06 56.6 104 37.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.3e-06 55.1 80 42.5
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 5.6e-06 54.7 113 33.6
AUR62019816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 5.6e-06 54.7 54 57.4
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 9.6e-06 53.9 123 35.8


User provided reference genes

Program Settings