Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.8e-54 213.8 110 100.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-52 209.1 110 96.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-52 209.1 110 98.2
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.2e-39 164.1 111 84.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-37 158.3 111 81.1
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 3.4e-37 158.3 106 82.1
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-36 156.0 111 80.2
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-35 153.3 111 79.3
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.3e-25 119.0 113 68.1
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 3.0e-25 118.6 104 66.3
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.9e-25 118.2 102 66.7
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-24 116.3 110 64.5
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 3.3e-24 115.2 103 67.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 3.3e-24 115.2 114 58.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.5e-24 113.6 107 66.4
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-22 109.8 113 63.7
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.0e-22 108.2 88 68.2
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.2e-21 106.7 106 64.2
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.0e-21 105.9 112 58.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.4e-21 105.1 82 67.1
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.4e-21 105.1 104 61.5
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.4e-21 104.8 105 62.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 3.8e-20 101.7 96 59.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.1e-19 100.1 103 60.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-19 99.8 82 63.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.9e-19 99.4 102 57.8
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.9e-19 99.4 82 65.9
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.4e-19 99.0 102 57.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 5.4e-19 97.8 103 62.1
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 9.2e-19 97.1 83 65.1
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.1e-18 95.9 102 53.9
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.7e-18 95.5 102 54.9
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.6e-18 94.7 97 58.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.0e-17 93.6 101 55.4
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.3e-17 93.2 93 58.1
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 5.1e-17 91.3 76 68.4
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.6e-17 90.9 109 54.1
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 8.7e-17 90.5 97 53.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.7e-17 90.5 96 57.3
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 8.7e-17 90.5 105 57.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.5e-16 89.7 92 57.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 4.3e-16 88.2 85 63.5
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.2e-15 86.7 108 54.6
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.6e-15 86.3 99 55.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.8e-15 85.5 94 57.4
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.8e-15 85.5 97 55.7
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.7e-15 84.7 114 53.5
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 8.1e-15 84.0 98 54.1
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.1e-15 84.0 89 57.3
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.8e-14 82.8 102 51.0
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 4.0e-14 81.6 91 53.8
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.0e-14 81.6 81 56.8
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 6.9e-14 80.9 95 54.7
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 9.0e-14 80.5 88 55.7
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 3.4e-13 78.6 94 52.1
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.8e-13 77.8 92 53.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 5.8e-13 77.8 96 54.2
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 7.6e-13 77.4 92 51.1
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 9.9e-13 77.0 104 48.1
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.9e-12 75.5 92 51.1
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.9e-12 75.5 95 50.5
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.9e-12 74.7 98 55.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 8.4e-12 73.9 88 59.1
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.9e-11 72.8 91 53.8
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 4.2e-11 71.6 63 71.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 7.1e-11 70.9 85 52.9
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-10 70.1 95 46.3
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.6e-10 69.7 95 46.3
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-10 69.7 95 46.3
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-10 69.7 95 46.3
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.1e-10 69.3 93 47.3
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.5e-10 68.6 62 61.3
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 7.8e-10 67.4 89 49.4
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 7.8e-10 67.4 78 62.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-09 67.0 85 47.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-09 67.0 95 46.3
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.0e-09 65.5 67 61.2
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.9e-09 65.1 63 61.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 3.9e-09 65.1 64 57.8
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.9e-09 65.1 74 54.1
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.9e-09 65.1 77 53.2
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-09 64.7 64 59.4
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.1e-09 64.7 64 59.4
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 5.1e-09 64.7 64 59.4
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 5.1e-09 64.7 103 43.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 6.6e-09 64.3 76 52.6
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 6.6e-09 64.3 69 55.1
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 6.6e-09 64.3 63 60.3
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 8.7e-09 63.9 63 63.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 74 52.7
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-08 63.5 98 43.9
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.5e-08 63.2 71 56.3
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 66 57.6
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 66 57.6
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.5e-08 63.2 66 57.6
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 61 59.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 61 59.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.9e-08 62.8 101 43.6
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 2.5e-08 62.4 68 58.8
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 64 57.8
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.5e-08 62.4 77 51.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.5e-08 62.4 87 48.3
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.5e-08 62.4 63 60.3
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 3.3e-08 62.0 80 48.8
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.3e-08 62.0 78 51.3
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.3e-08 62.0 89 49.4
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.3e-08 62.0 98 45.9
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 4.3e-08 61.6 58 63.8
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 4.3e-08 61.6 72 56.9
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 5.6e-08 61.2 63 60.3
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 7.3e-08 60.8 66 57.6
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 7.3e-08 60.8 102 40.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 9.6e-08 60.5 71 53.5
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 9.6e-08 60.5 86 51.2
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 9.6e-08 60.5 93 47.3
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 9.6e-08 60.5 98 41.8
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 107 43.0
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 61 57.4
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.3e-07 60.1 61 57.4
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.6e-07 59.7 100 44.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.6e-07 59.7 81 45.7
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-07 59.3 73 52.1
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 63 58.7
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.8e-07 58.9 92 41.3
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 3.6e-07 58.5 61 55.7
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 3.6e-07 58.5 61 55.7
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 3.6e-07 58.5 61 55.7
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.6e-07 58.5 74 51.4
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 4.8e-07 58.2 81 44.4
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.2e-07 57.8 83 47.0
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 6.2e-07 57.8 89 46.1
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 6.2e-07 57.8 96 40.6
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 8.1e-07 57.4 112 42.0
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 8.1e-07 57.4 77 49.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 76 51.3
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 79 45.6
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.1e-06 57.0 77 50.6
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 1.1e-06 57.0 82 46.3
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.1e-06 57.0 74 45.9
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.4e-06 56.6 43 69.8
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.8e-06 56.2 94 42.6
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.8e-06 56.2 78 43.6
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 82 45.1
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.1e-06 55.5 84 45.2
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.1e-06 55.5 45 62.2
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.1e-06 55.5 86 43.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.0e-06 55.1 88 40.9
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-06 54.7 76 51.3
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 5.3e-06 54.7 81 42.0
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 9.0e-06 53.9 87 41.4


User provided reference genes

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