Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.7e-232 808.9 391 100.0
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.4e-231 803.9 391 99.5
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.6e-225 785.0 391 97.7
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 2.5e-199 698.7 393 86.0
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 7.9e-198 693.7 394 85.8
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 2.6e-180 635.6 393 81.4
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 9.8e-164 580.5 396 72.2
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 1.3e-163 580.1 394 73.6
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.3e-163 577.4 402 70.4
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 8.3e-163 577.4 385 71.4
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.5e-161 572.0 392 70.2
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 2.3e-160 569.3 393 69.0
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.3e-160 569.3 385 71.9
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.3e-160 569.3 394 72.1
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 2.9e-160 568.9 393 68.7
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 8.6e-160 567.4 393 69.5
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.1e-159 567.0 386 70.7
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 2.1e-158 562.8 377 71.4
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.7e-158 561.6 386 69.9
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 4.7e-158 561.6 397 68.3
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 6.2e-158 561.2 380 70.8
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 8.0e-158 560.8 388 69.1
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 1.4e-157 560.1 387 69.8
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.8e-157 559.7 403 68.2
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 2.3e-157 559.3 392 68.4
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 5.2e-157 558.1 385 69.1
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 5.2e-157 558.1 428 65.7
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 5.2e-157 558.1 397 67.5
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.8e-157 557.8 392 68.1
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.2e-156 557.0 385 69.4
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.2e-156 557.0 371 72.5
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.5e-156 556.6 399 71.9
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.0e-156 556.2 392 68.1
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.6e-156 555.8 378 69.8
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 3.4e-156 555.4 398 68.3
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 3.4e-156 555.4 425 66.8
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.4e-156 555.1 392 67.6
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 5.8e-156 554.7 384 69.0
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 9.8e-156 553.9 386 69.4
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-155 553.5 378 69.8
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.3e-155 553.5 378 69.8
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.3e-155 553.5 388 68.6
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.3e-155 553.5 393 67.7
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 2.9e-155 552.4 380 70.0
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.7e-155 552.0 365 71.8
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 6.4e-155 551.2 386 68.4
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 6.4e-155 551.2 383 69.2
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 8.3e-155 550.8 397 66.8
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 8.3e-155 550.8 367 69.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.4e-154 550.1 393 67.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-154 549.7 381 69.3
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-154 549.7 381 69.3
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-154 549.7 381 69.3
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.4e-154 549.3 383 69.7
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.2e-154 548.9 395 68.1
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 3.2e-154 548.9 394 67.8
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 4.1e-154 548.5 380 68.4
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 5.4e-154 548.1 384 67.2
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 9.2e-154 547.4 380 69.2
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.6e-153 546.6 390 67.7
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.0e-153 546.2 389 67.6
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 3.5e-153 545.4 378 69.0
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.6e-153 545.0 395 65.6
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 7.8e-153 544.3 404 66.1
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.3e-152 542.7 396 67.7
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 5.0e-152 541.6 375 68.8
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 5.0e-152 541.6 368 69.3
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 6.6e-152 541.2 375 69.3
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.5e-151 540.0 362 69.9
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.5e-151 539.3 377 68.7
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 2.5e-151 539.3 371 71.2
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 5.6e-151 538.1 383 68.1
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 2.1e-150 536.2 372 68.8
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.8e-150 535.8 372 69.4
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.1e-149 533.9 362 69.3
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 2.3e-149 532.7 396 65.4
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.5e-148 530.0 389 65.6
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-148 530.0 376 68.4
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 2.0e-148 529.6 378 67.5
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 2.0e-148 529.6 379 68.9
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.4e-148 528.9 387 66.4
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 3.7e-147 525.4 387 66.4
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.2e-145 520.4 363 66.9
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.7e-145 519.2 398 64.3
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.7e-145 519.2 399 64.7
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 3.5e-145 518.8 367 65.9
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 1.0e-144 517.3 373 66.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.3e-144 516.9 402 63.7
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.3e-144 516.2 372 66.7
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 3.0e-144 515.8 374 68.2
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 7.3e-143 511.1 358 69.6
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.0e-141 505.4 381 63.3
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 5.2e-141 505.0 383 63.2
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 8.9e-141 504.2 402 61.9
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.1e-135 487.3 398 64.8
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-134 483.8 340 69.1
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 3.6e-134 482.3 371 62.8
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 4.7e-134 481.9 433 55.4
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 8.1e-134 481.1 373 62.5
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.4e-133 479.6 373 61.4
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 5.8e-132 474.9 384 60.7
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 8.4e-131 471.1 392 61.2
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 1.3e-128 463.8 393 59.0
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 3.3e-127 459.1 361 60.9
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.3e-126 457.2 389 58.1
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 1.3e-126 457.2 389 58.1
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 2.8e-126 456.1 367 59.9
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 1.6e-121 440.3 376 55.6
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 5.6e-119 431.8 374 55.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 4.0e-117 425.6 285 69.1
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 5.3e-117 425.2 375 54.1
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 5.3e-117 425.2 285 69.1
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.2e-116 424.1 291 68.4
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.9e-114 416.8 370 54.6
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 2.3e-112 409.8 262 74.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 3.3e-111 406.0 376 51.3
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.6e-111 405.2 263 77.6
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 5.6e-111 405.2 256 74.2
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 3.7e-110 402.5 403 55.1
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.8e-109 400.2 616 39.6
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.6e-108 396.4 367 52.6
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.2e-105 387.5 266 66.9
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 3.5e-105 386.0 370 55.7
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.4e-101 374.0 374 51.3
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 7.6e-100 368.2 363 49.0
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-99 367.1 246 67.5
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 8.4e-99 364.8 237 70.5
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-98 363.6 247 66.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.5e-98 363.2 246 66.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.1e-93 347.8 246 64.6
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 2.6e-92 343.2 400 45.5
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 3.8e-91 339.3 265 64.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 3.9e-88 329.3 245 65.3
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.8e-85 320.5 359 47.4
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.0e-80 304.7 296 59.5
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.2e-78 295.0 192 70.3
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 5.0e-67 259.2 158 75.3
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 2.5e-58 230.3 171 67.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.2e-57 228.0 210 53.3
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.6e-47 193.7 133 69.9
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.7e-46 191.0 209 50.7
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.1e-40 170.2 112 67.9
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 8.9e-40 168.7 404 32.2
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 4.9e-38 162.9 130 63.1
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.0e-35 152.9 106 63.2
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.7e-30 137.9 394 28.2
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.7e-30 136.7 173 46.8
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 2.4e-29 134.0 295 31.2
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 2.8e-25 120.6 99 56.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 5.4e-21 106.3 288 28.5
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 7.1e-21 105.9 70 62.9
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 9.2e-21 105.5 93 55.9
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 3.9e-19 100.1 93 52.7
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 4.3e-18 96.7 93 51.6
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 2.1e-17 94.4 95 49.5
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 2.2e-14 84.3 384 24.7
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-10 71.2 52 59.6
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-09 68.6 48 60.4
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.6e-09 68.2 59 55.9
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 2.8e-09 67.4 55 54.5


User provided reference genes

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