Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 6.6e-105 384.0 193 100.0
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.4e-102 376.3 193 97.4
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 6.7e-97 357.5 193 93.3
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 4.2e-59 231.9 194 64.4
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 1.7e-55 219.9 191 59.7
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.2e-50 203.8 196 58.2
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 2.7e-50 202.6 196 57.7
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 1.0e-49 200.7 190 57.9
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 2.8e-47 192.6 195 55.9
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 8.9e-25 117.9 197 44.2
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 4.7e-18 95.5 157 41.4
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 1.7e-15 87.0 187 36.4
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 3.7e-15 85.9 210 33.3
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 1.6e-13 80.5 189 33.9
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 1.3e-12 77.4 178 34.8
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 3.0e-12 76.3 192 35.9
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 3.0e-12 76.3 179 34.6
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 1.9e-11 73.6 168 35.7
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 2.5e-11 73.2 178 35.4
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 1.6e-10 70.5 209 32.1
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 3.6e-10 69.3 176 33.5
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 6.2e-10 68.6 155 36.8
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 8.1e-10 68.2 206 31.1
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 1.1e-09 67.8 160 36.2
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 1.4e-09 67.4 192 34.4
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 2.3e-09 66.6 184 33.2
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 4.0e-09 65.9 219 30.1
THA.LOC104818323 Tarenaya hassleriana HOM05D010063 ORTHO05D011941 5.2e-09 65.5 88 42.0
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 6.8e-09 65.1 201 31.3
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 8.9e-09 64.7 165 32.1
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 1.5e-08 63.9 139 34.5
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 2.6e-08 63.2 163 33.7
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 3.4e-08 62.8 160 33.1
ClCG04G012080 Citrullus lanatus HOM05D008369 ORTHO05D005932 4.4e-08 62.4 197 32.5
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 4.4e-08 62.4 162 35.2
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 5.8e-08 62.0 188 30.3
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 5.8e-08 62.0 188 31.9
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 5.8e-08 62.0 143 35.0
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 7.6e-08 61.6 144 34.7
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 9.9e-08 61.2 171 34.5
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 1.3e-07 60.8 168 31.5
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 1.3e-07 60.8 193 30.1
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.7e-07 60.5 168 31.0
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 1.7e-07 60.5 167 35.9
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 1.7e-07 60.5 185 31.9
Cpa.g.sc13.297 Carica papaya HOM05D008369 ORTHO05D005932 3.7e-07 59.3 202 32.7
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 3.7e-07 59.3 216 31.9
Thhalv10014431m.g Eutrema salsugineum HOM05D010063 ORTHO05D011941 4.9e-07 58.9 89 40.4
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 4.9e-07 58.9 168 31.0
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 6.4e-07 58.5 190 30.5
Sp6g35170 Schrenkiella parvula HOM05D010063 ORTHO05D011941 6.4e-07 58.5 111 37.8
Sc12g0006540 Simmondsia chinensis HOM05D008369 ORTHO05D005932 6.4e-07 58.5 147 29.9
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 1.1e-06 57.8 190 28.4
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 1.1e-06 57.8 184 31.5
AL6G18100 Arabidopsis lyrata HOM05D010063 ORTHO05D011941 1.9e-06 57.0 88 34.1
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 2.4e-06 56.6 148 35.1
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 2.4e-06 56.6 161 31.7
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 3.2e-06 56.2 206 30.6
AT5G07730 Arabidopsis thaliana HOM05D010063 ORTHO05D011941 4.1e-06 55.8 88 34.1
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 4.1e-06 55.8 136 32.4
AT5G61360 Arabidopsis thaliana HOM05D010063 ORTHO05D011941 5.4e-06 55.5 188 29.3
CARHR205420 Cardamine hirsuta HOM05D010063 ORTHO05D011941 5.4e-06 55.5 88 35.2
A03p03440 Brassica napus HOM05D010063 ORTHO05D011941 7.1e-06 55.1 100 33.0
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 7.1e-06 55.1 98 37.8
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 7.1e-06 55.1 202 30.2
CARHR275120 Cardamine hirsuta HOM05D010063 ORTHO05D011941 9.2e-06 54.7 202 29.7


User provided reference genes

Program Settings