Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 0.0e+00 1336.2 735 100.0
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 0.0e+00 1295.4 728 97.1
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 0.0e+00 1278.1 735 96.3
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 1.1e-293 1013.1 731 77.6
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.5e-274 949.5 676 76.8
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.4e-224 783.5 703 63.6
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.4e-195 687.2 841 51.5
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 4.1e-179 632.5 667 56.8
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 7.0e-179 631.7 827 50.2
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 4.0e-174 615.9 750 54.0
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.1e-171 607.8 481 68.8
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 4.7e-167 592.4 727 51.4
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.7e-164 583.9 790 48.0
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 2.8e-164 583.2 783 50.4
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 3.1e-163 579.7 763 50.2
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 4.1e-163 579.3 793 47.9
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 2.7e-162 576.6 904 45.4
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 3.5e-162 576.2 609 55.5
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 3.5e-162 576.2 659 52.5
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 5.9e-162 575.5 706 51.7
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.8e-161 572.8 477 66.5
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 3.8e-161 572.8 791 48.9
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 5.0e-161 572.4 660 54.4
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 6.6e-161 572.0 779 49.0
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 8.6e-161 571.6 905 44.9
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.1e-159 567.0 475 65.9
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 5.2e-158 562.4 868 45.4
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 2.0e-157 560.5 669 51.4
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 4.4e-157 559.3 484 64.7
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.3e-156 557.8 637 53.7
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 3.7e-156 556.2 920 43.4
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 4.9e-156 555.8 668 52.1
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 7.0e-155 552.0 632 51.6
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 1.2e-154 551.2 658 52.1
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 1.6e-154 550.8 777 47.5
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.6e-154 550.8 488 61.1
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 2.0e-154 550.4 484 63.4
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.3e-153 547.7 653 52.4
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.3e-153 547.0 749 48.6
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 2.5e-152 543.5 474 61.8
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 9.5e-152 541.6 829 47.4
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 9.5e-152 541.6 768 48.8
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.7e-151 539.3 742 48.7
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 4.7e-151 539.3 467 63.4
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 2.3e-150 537.0 645 50.4
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 3.0e-150 536.6 608 55.1
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.5e-149 534.3 771 45.7
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 4.4e-149 532.7 934 42.7
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.9e-148 529.3 815 46.5
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 6.4e-148 528.9 562 57.3
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.1e-147 528.1 733 48.4
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.9e-147 527.3 482 62.0
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 7.0e-147 525.4 490 59.6
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 9.2e-147 525.0 495 59.8
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 2.0e-146 523.9 680 49.6
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 4.6e-146 522.7 501 58.7
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 3.0e-145 520.0 706 46.6
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 3.9e-145 519.6 748 47.3
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 5.0e-145 519.2 737 47.4
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.5e-144 517.7 453 64.7
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 9.5e-144 515.0 481 59.9
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.6e-143 514.2 750 46.7
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 3.1e-142 510.0 563 55.8
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 5.2e-142 509.2 774 44.7
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 6.8e-142 508.8 1007 40.1
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 3.4e-141 506.5 477 59.3
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 5.8e-141 505.8 670 52.5
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.7e-140 504.2 477 61.2
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 1.7e-140 504.2 728 47.7
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.9e-139 500.7 678 47.8
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 7.0e-139 498.8 551 55.5
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 1.2e-138 498.0 424 61.3
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 3.3e-136 490.0 745 46.2
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 2.8e-135 486.9 739 48.3
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 3.6e-135 486.5 726 46.0
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.2e-135 485.7 749 46.2
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 1.5e-133 481.1 473 57.3
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 2.6e-133 480.3 748 46.5
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 5.8e-133 479.2 477 57.4
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 2.2e-132 477.2 494 56.7
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.4e-131 474.6 406 63.3
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 4.1e-131 473.0 721 44.8
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 9.2e-131 471.9 563 53.1
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 3.3e-128 463.4 421 60.6
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 9.5e-128 461.8 411 61.8
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.2e-127 461.5 430 59.8
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 1.6e-127 461.1 455 57.6
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 2.8e-127 460.3 488 54.7
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 2.6e-125 453.8 688 46.9
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 2.7e-122 443.7 438 57.8
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 3.5e-122 443.4 483 55.9
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 3.1e-118 430.3 471 53.3
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 4.4e-117 426.4 474 53.0
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 9.9e-117 425.2 757 42.3
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 8.4e-116 422.2 773 43.1
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 1.4e-115 421.4 486 52.3
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 2.6e-109 400.6 628 43.5
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 9.3e-107 392.1 453 51.9
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 1.9e-104 384.4 288 73.3
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 7.6e-101 372.5 285 67.4
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 5.1e-97 359.8 648 41.0
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 9.0e-94 349.0 394 53.3
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 1.3e-92 345.1 517 46.4
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 2.8e-79 300.8 522 40.2
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 2.7e-66 257.7 373 46.6
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.0e-41 176.0 200 45.5
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 1.4e-41 175.6 257 50.2
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 5.9e-37 160.2 169 53.3
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.1e-35 156.0 111 67.6
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 3.4e-32 144.4 111 65.8
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.2e-24 119.4 82 76.8
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 1.9e-19 102.1 86 67.4
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 8.1e-18 96.7 82 63.4
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.8e-17 95.5 82 63.4
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 3.1e-09 68.2 131 41.2


User provided reference genes

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