Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.5e-79 299.3 135 100.0
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.4e-79 298.1 135 99.3
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-77 292.7 135 97.8
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.6e-73 279.3 135 91.9
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.4e-72 276.2 135 91.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.8e-72 275.8 135 90.4
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 5.4e-69 264.2 131 86.3
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 80.7
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.6e-65 252.7 137 81.8
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.6e-65 252.7 137 81.8
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.1e-65 252.3 137 81.8
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.1e-65 252.3 135 78.5
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 5.2e-64 247.7 135 80.0
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.0e-63 245.7 133 82.0
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.0e-63 245.7 135 80.0
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.4e-63 245.0 135 77.0
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 3.4e-63 245.0 147 75.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 3.4e-63 245.0 133 82.0
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 4.4e-63 244.6 135 79.3
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 9.8e-63 243.4 133 81.2
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.3e-62 243.0 135 77.8
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.2e-62 242.3 135 77.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.9e-62 241.9 135 77.0
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 6.4e-62 240.7 135 76.3
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.4e-61 239.6 145 73.8
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.8e-61 239.2 130 80.0
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 5.4e-61 237.7 148 70.3
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 5.4e-61 237.7 134 75.4
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 9.2e-61 236.9 150 70.7
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.0e-60 235.7 147 70.7
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.5e-60 235.0 135 75.6
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 4.6e-60 234.6 153 68.0
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 4.6e-60 234.6 153 69.3
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 74.1
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.3e-59 233.0 135 76.3
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.7e-59 232.6 123 81.3
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.3e-59 232.3 135 74.1
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 3.9e-59 231.5 159 64.8
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 74.1
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 5.0e-59 231.1 144 69.4
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 8.6e-59 230.3 145 69.0
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.6e-59 230.3 150 68.0
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 5.6e-58 227.6 148 68.9
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 7.3e-58 227.3 153 66.7
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 9.5e-58 226.9 148 68.9
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-57 226.5 136 72.8
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.2e-57 226.5 136 72.8
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.2e-57 226.5 136 74.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.1e-57 225.7 145 66.9
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.1e-57 225.7 130 74.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 71.1
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 2.8e-57 225.3 135 71.1
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 2.8e-57 225.3 144 69.4
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 6.2e-57 224.2 123 78.0
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.1
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.1
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 8.0e-57 223.8 157 64.3
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 71.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.0e-56 223.4 133 72.9
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.0e-56 223.4 159 64.2
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-56 223.4 152 64.5
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.4e-56 223.0 135 70.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.4e-56 223.0 135 71.1
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.4e-56 223.0 135 71.1
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 1.4e-56 223.0 153 65.4
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.8e-56 222.6 145 66.9
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.8e-56 222.6 153 65.4
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 73.3
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 2.3e-56 222.2 138 71.7
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 2.3e-56 222.2 153 66.0
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 2.3e-56 222.2 153 66.0
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 71.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 70.4
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 4.0e-56 221.5 135 71.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.0e-56 221.5 145 69.7
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.0e-56 221.5 153 65.4
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.0e-56 221.5 141 68.1
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 5.2e-56 221.1 149 65.8
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 5.2e-56 221.1 135 71.1
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 6.8e-56 220.7 149 67.8
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 6.8e-56 220.7 136 70.6
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 8.9e-56 220.3 135 70.4
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.5e-55 219.5 135 70.4
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 3.4e-55 218.4 122 77.0
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 4.4e-55 218.0 135 68.1
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 4.4e-55 218.0 132 72.0
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 7.5e-55 217.2 149 65.1
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 9.8e-55 216.9 133 71.4
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.7e-54 216.1 123 75.6
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 5.4e-53 211.1 135 69.6
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 5.4e-53 211.1 122 73.8
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 2.0e-52 209.1 128 71.1
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 2.7e-52 208.8 130 70.0
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.5e-52 208.4 130 70.8
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 6.0e-52 207.6 123 70.7
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 6.0e-52 207.6 132 68.9
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.3e-51 205.7 131 69.5
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 5.0e-51 204.5 123 69.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 8.6e-51 203.8 146 62.3
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.9e-50 202.6 142 64.1
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.9e-50 202.6 118 72.9
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 2.5e-50 202.2 130 70.8
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 9.5e-50 200.3 129 68.2
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 9.5e-50 200.3 128 70.3
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 8.1e-49 197.2 150 60.7
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.2e-48 194.5 114 73.7
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.2e-48 194.5 114 73.7
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 2.2e-46 189.1 159 57.2
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 4.9e-46 188.0 159 56.0
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 3.5e-44 181.8 123 66.7
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 3.5e-44 181.8 173 52.0
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 4.4e-39 164.9 107 68.2
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.1e-37 158.3 116 59.5
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 4.6e-36 154.8 124 54.0
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 5.1e-35 151.4 136 52.9
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 9.6e-34 147.1 126 50.8
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.8e-33 145.6 87 73.6
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.4e-32 143.3 144 47.2
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 4.4e-31 138.3 75 78.7
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.2e-23 113.6 58 81.0
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 1.5e-23 113.2 59 78.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.2e-20 103.6 114 49.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.6e-17 93.2 74 55.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.5e-15 86.7 54 64.8
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.8e-14 82.0 81 48.1
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.4e-13 80.1 109 39.4
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 2.4e-13 79.3 80 47.5
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 4.2e-13 78.6 107 41.1
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.2e-12 77.0 80 46.2
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.8e-11 73.2 40 75.0
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.8e-11 73.2 75 48.0
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.9e-11 72.0 49 61.2
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.1e-10 70.5 94 38.3
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.3e-10 68.9 46 60.9
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.3e-10 68.9 46 60.9
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 4.3e-10 68.6 47 59.6
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 7.4e-10 67.8 43 65.1
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.7e-09 65.5 47 57.4
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 5.3e-08 61.6 54 51.9
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 4.5e-07 58.5 101 30.7
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 5.8e-07 58.2 48 56.2
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 8.4e-06 54.3 45 53.3


User provided reference genes

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