Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 3.3e-71 271.9 173 100.0
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 6.2e-70 267.7 173 98.8
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 6.4e-67 257.7 174 87.9
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 2.7e-57 225.7 173 83.8
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 3.0e-56 222.2 175 69.7
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 3.0e-56 222.2 176 83.0
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 6.7e-56 221.1 176 71.0
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 9.0e-53 210.7 177 66.7
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 1.2e-52 210.3 176 66.5
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.6e-52 209.1 176 65.9
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.6e-52 209.1 178 70.2
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 3.4e-52 208.8 173 68.8
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 1.0e-51 207.2 177 68.9
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.3e-51 206.8 178 69.7
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 1.7e-51 206.5 176 65.9
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 3.8e-51 205.3 173 64.2
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 3.8e-51 205.3 173 64.2
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 6.5e-51 204.5 173 65.3
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 6.5e-51 204.5 173 71.1
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 1.9e-50 203.0 173 65.9
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 3.2e-50 202.2 178 64.6
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 7.1e-50 201.1 174 65.5
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 7.1e-50 201.1 173 72.8
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 9.3e-50 200.7 177 68.4
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 9.3e-50 200.7 177 68.4
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.2e-49 200.3 178 67.4
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 1.6e-49 199.9 173 67.1
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.6e-49 199.9 178 67.4
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 2.1e-49 199.5 175 66.3
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 2.1e-49 199.5 174 63.2
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 2.7e-49 199.1 178 64.0
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 7.9e-49 197.6 173 80.3
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 7.9e-49 197.6 173 65.3
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 1.0e-48 197.2 185 61.1
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 1.0e-48 197.2 177 63.3
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 1.3e-48 196.8 180 66.1
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 1.3e-48 196.8 174 70.1
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 1.3e-48 196.8 179 69.8
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 2.3e-48 196.1 174 64.9
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 2.3e-48 196.1 175 66.9
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 2.3e-48 196.1 173 74.0
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 2.3e-48 196.1 173 64.2
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 3.0e-48 195.7 175 64.6
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 3.0e-48 195.7 175 72.0
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 3.0e-48 195.7 174 62.1
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 5.1e-48 194.9 174 70.7
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 5.1e-48 194.9 173 62.4
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 6.7e-48 194.5 174 63.2
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 6.7e-48 194.5 176 63.6
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 1.5e-47 193.4 175 64.0
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 2.5e-47 192.6 181 61.3
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 3.3e-47 192.2 177 59.9
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 3.3e-47 192.2 177 59.9
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 4.3e-47 191.8 176 64.2
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 5.7e-47 191.4 174 62.6
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 5.7e-47 191.4 174 62.1
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 5.7e-47 191.4 175 65.1
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 7.4e-47 191.0 174 66.7
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 7.4e-47 191.0 175 65.1
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 9.7e-47 190.7 174 67.8
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 9.7e-47 190.7 175 65.1
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 9.7e-47 190.7 175 63.4
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.3e-46 190.3 173 65.9
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.3e-46 190.3 180 65.6
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 1.3e-46 190.3 174 62.1
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 2.2e-46 189.5 177 62.1
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 2.2e-46 189.5 175 64.6
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 2.2e-46 189.5 175 68.6
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 3.7e-46 188.7 186 59.7
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 4.8e-46 188.3 110 86.4
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 6.3e-46 188.0 118 82.2
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.1e-45 187.2 110 86.4
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 2.4e-45 186.0 174 62.1
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 3.1e-45 185.7 107 86.0
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 3.1e-45 185.7 120 80.0
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 4.1e-45 185.3 172 61.6
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 4.1e-45 185.3 114 82.5
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 6.9e-45 184.5 178 59.6
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 9.0e-45 184.1 110 82.7
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 9.0e-45 184.1 177 61.6
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.5e-44 183.3 120 79.2
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 2.0e-44 183.0 177 62.1
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 2.6e-44 182.6 182 59.9
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 2.6e-44 182.6 108 82.4
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 3.4e-44 182.2 111 82.0
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 3.4e-44 182.2 108 82.4
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 3.4e-44 182.2 178 61.8
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 4.5e-44 181.8 110 80.9
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 4.5e-44 181.8 110 80.9
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 4.5e-44 181.8 110 80.9
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 4.5e-44 181.8 110 80.9
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 4.5e-44 181.8 110 80.9
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 4.5e-44 181.8 180 61.1
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 5.9e-44 181.4 110 80.9
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 5.9e-44 181.4 110 80.9
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 5.9e-44 181.4 110 80.9
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 5.9e-44 181.4 110 81.8
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 5.9e-44 181.4 183 58.5
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 5.9e-44 181.4 179 59.8
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 5.9e-44 181.4 110 81.8
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 7.7e-44 181.0 103 88.3
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 1.0e-43 180.6 177 58.8
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 1.0e-43 180.6 174 72.4
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 1.0e-43 180.6 174 60.9
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 1.3e-43 180.3 110 80.0
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 2.9e-43 179.1 172 58.7
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 2.9e-43 179.1 172 58.7
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 2.9e-43 179.1 118 78.8
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 3.8e-43 178.7 110 80.0
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 5.0e-43 178.3 111 82.0
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 5.0e-43 178.3 181 58.0
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 6.5e-43 177.9 105 81.9
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 8.5e-43 177.6 169 68.0
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 3.0e-40 169.1 166 60.2
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 1.3e-38 163.7 110 76.4
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 4.2e-34 148.7 85 84.7
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 6.7e-32 141.4 115 61.7
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 4.8e-30 135.2 116 58.6
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 1.4e-29 133.7 111 62.2
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 4.5e-28 128.6 128 53.1
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 7.7e-28 127.9 119 58.8
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 3.2e-26 122.5 137 56.9
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 4.2e-26 122.1 77 74.0
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 3.7e-22 109.0 105 49.5
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 4.5e-20 102.1 117 46.2
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 2.2e-19 99.8 128 47.7
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 8.5e-19 97.8 70 74.3
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 2.1e-17 93.2 170 56.5
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 3.4e-07 59.3 98 28.6
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.7e-06 57.0 100 28.0
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 27.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 27.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 3.7e-06 55.8 98 28.6
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 4.9e-06 55.5 98 26.5
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 4.9e-06 55.5 98 26.5
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 4.9e-06 55.5 98 26.5
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 4.9e-06 55.5 98 27.6
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 4.9e-06 55.5 98 27.6
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 4.9e-06 55.5 100 27.0
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 8.3e-06 54.7 98 26.5
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 8.3e-06 54.7 98 27.6


User provided reference genes

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