Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 4.7e-132 474.6 243 100.0
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.0e-130 469.2 243 99.2
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.6e-122 442.2 243 95.1
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 1.3e-89 333.6 248 71.8
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 2.5e-85 319.3 242 71.1
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 5.6e-77 291.6 251 65.3
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 2.4e-51 206.5 250 53.2
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 3.1e-51 206.1 251 54.2
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 1.2e-50 204.1 247 51.8
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 3.5e-50 202.6 246 52.4
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 5.9e-50 201.8 248 51.2
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 4.2e-48 195.7 255 48.2
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 9.4e-48 194.5 252 49.6
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 1.2e-47 194.1 254 48.0
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 2.7e-47 193.0 247 50.2
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 2.7e-47 193.0 288 44.8
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 8.0e-47 191.4 243 47.7
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 2.3e-46 189.9 262 48.5
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 3.0e-46 189.5 256 47.3
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 3.0e-46 189.5 254 48.0
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 3.0e-46 189.5 244 48.8
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 5.2e-46 188.7 216 51.4
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 6.7e-46 188.3 248 51.6
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 3.3e-45 186.0 250 48.0
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 4.4e-45 185.7 254 47.2
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.3e-44 184.1 248 47.6
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 2.2e-44 183.3 254 46.9
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 3.7e-44 182.6 250 46.8
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 6.3e-44 181.8 217 50.7
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 8.2e-44 181.4 253 48.2
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 8.2e-44 181.4 221 52.9
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 1.8e-43 180.3 255 45.5
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 7.0e-43 178.3 218 51.4
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 3.5e-42 176.0 250 46.8
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 5.9e-42 175.3 243 46.5
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.0e-41 174.5 255 46.7
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 2.2e-41 173.3 256 46.9
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 2.2e-41 173.3 245 45.7
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 2.9e-41 172.9 245 48.2
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 3.8e-41 172.6 241 46.5
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.5e-40 170.6 218 50.5
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.5e-40 170.6 218 50.5
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 7.2e-40 168.3 255 45.9
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 6.1e-39 165.2 257 44.4
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 6.1e-39 165.2 257 44.4
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 8.0e-39 164.9 249 43.4
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 8.0e-39 164.9 247 45.7
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 8.0e-39 164.9 253 45.5
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 1.0e-38 164.5 248 45.2
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.0e-38 164.5 258 46.1
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 1.8e-38 163.7 262 43.1
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 1.8e-38 163.7 247 44.9
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 3.0e-38 162.9 251 43.4
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 4.0e-38 162.5 265 45.3
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 4.0e-38 162.5 250 42.0
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 5.2e-38 162.2 250 43.6
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 2.6e-37 159.8 264 45.1
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 9.7e-37 157.9 246 43.5
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 1.3e-36 157.5 250 43.6
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 1.1e-35 154.5 247 43.3
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 1.4e-35 154.1 149 59.1
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 5.3e-35 152.1 248 42.7
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 7.0e-35 151.8 255 43.1
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 9.1e-35 151.4 270 41.1
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 9.1e-35 151.4 249 42.2
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 6.5e-33 145.2 187 47.1
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 2.5e-32 143.3 173 49.1
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 3.2e-32 142.9 238 42.9
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 2.7e-31 139.8 217 42.4
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 1.2e-29 134.4 214 44.4
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 2.6e-29 133.3 210 44.8
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 7.5e-29 131.7 188 43.6
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 1.3e-28 131.0 244 39.3
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 2.2e-28 130.2 166 48.2
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 7.0e-27 125.2 202 40.6
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 1.2e-26 124.4 219 42.0
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.2e-26 124.4 221 39.8
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 1.6e-26 124.0 119 57.1
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 3.5e-26 122.9 208 40.9
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 3.3e-24 116.3 216 38.0
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 1.4e-22 110.9 173 41.6
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 3.4e-21 106.3 135 46.7
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 1.9e-16 90.5 134 43.3
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 2.2e-12 77.0 77 55.8
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 8.3e-12 75.1 105 47.6
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 3.2e-11 73.2 220 31.8
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 6.0e-10 68.9 108 42.6
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 3.0e-09 66.6 60 66.7
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 2.1e-07 60.5 58 60.3


User provided reference genes

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