Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.0e-49 196.8 116 100.0
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.4e-46 186.8 116 95.7
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.1e-45 184.1 116 89.7
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.7e-42 174.9 116 90.5
Gohir.D12G169001 Gossypium hirsutum HOM05D023568 ORTHO05D005062 4.5e-32 141.4 91 92.3
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.3e-20 102.4 68 92.6
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.0e-20 102.1 68 92.6
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.8e-20 100.9 65 96.9
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.4e-19 98.6 68 91.2
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.7e-18 95.1 59 88.1
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 3.7e-18 95.1 59 88.1
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 8.3e-18 94.0 68 85.3
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 7.0e-17 90.9 66 87.9
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.2e-16 90.1 59 83.1
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.7e-15 86.3 68 82.4
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 2.9e-15 85.5 67 82.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.5e-15 84.0 71 81.7
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.5e-15 84.0 113 56.6
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.5e-14 83.2 62 88.7
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.2e-14 80.9 57 89.5
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.1e-13 79.3 68 75.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.4e-12 76.6 67 74.6
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.0e-12 75.5 68 73.5
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 8.8e-12 73.9 68 72.1
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.2e-11 73.6 68 73.5
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.5e-11 73.2 67 76.1
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.0e-11 72.8 68 69.1
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.6e-11 72.4 68 73.5
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.4e-11 72.0 68 72.1
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.4e-11 72.0 68 72.1
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.4e-11 72.0 68 70.6
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.4e-11 72.0 68 70.6
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 3.4e-11 72.0 68 70.6
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.4e-11 71.6 68 75.0
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 4.4e-11 71.6 67 71.6
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.4e-11 71.6 67 71.6
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.4e-11 71.6 67 71.6
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.4e-11 71.6 67 71.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.4e-11 71.6 66 71.2
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.7e-11 71.2 64 75.0
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 5.7e-11 71.2 68 72.1
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 5.7e-11 71.2 76 69.7
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 5.7e-11 71.2 68 73.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 7.5e-11 70.9 68 70.6
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 7.5e-11 70.9 67 73.1
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.5e-11 70.9 66 74.2
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 7.5e-11 70.9 64 79.7
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 9.8e-11 70.5 67 73.1
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 9.8e-11 70.5 86 62.8
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.3e-10 70.1 65 76.9
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.3e-10 70.1 65 72.3
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.3e-10 70.1 68 73.5
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.3e-10 70.1 68 73.5
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.7e-10 69.7 68 70.6
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 2.2e-10 69.3 86 61.6
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 3.7e-10 68.6 67 68.7
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 3.7e-10 68.6 77 66.2
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 4.8e-10 68.2 68 70.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.3e-10 67.8 67 67.2
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.3e-10 67.8 67 67.2
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 6.3e-10 67.8 65 72.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 6.3e-10 67.8 68 67.6
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.1e-09 67.0 68 66.2
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.1e-09 67.0 68 72.1
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.1e-09 67.0 60 76.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.1e-09 67.0 68 67.6
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 69.1
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.4e-09 66.6 68 66.2
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 1.8e-09 66.2 65 75.4
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.8e-09 66.2 68 66.2
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.4e-09 65.9 68 64.7
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.4e-09 65.9 68 69.1
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 2.4e-09 65.9 68 69.1
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.4e-09 65.9 68 69.1
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 3.1e-09 65.5 67 68.7
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.1e-09 65.1 68 67.6
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 4.1e-09 65.1 68 67.6
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.1e-09 65.1 68 67.6
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 7.0e-09 64.3 69 72.5
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 7.0e-09 64.3 69 72.5
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 7.0e-09 64.3 49 67.3
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.1e-09 63.9 70 68.6
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 9.1e-09 63.9 68 69.1
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.2e-08 63.5 67 65.7
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.2e-08 63.5 67 65.7
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.2e-08 63.5 63 69.8
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.6e-08 63.2 60 71.7
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 1.6e-08 63.2 59 59.3
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.6e-08 63.2 65 60.0
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 3.5e-08 62.0 68 69.1
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.5e-08 62.0 68 69.1
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 4.5e-08 61.6 68 63.2
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 4.5e-08 61.6 68 58.8
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.5e-08 61.6 68 66.2
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.9e-08 61.2 68 67.6
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.9e-08 61.2 68 67.6
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 7.7e-08 60.8 68 61.8
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 7.7e-08 60.8 60 55.0
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 7.7e-08 60.8 60 71.7
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 7.7e-08 60.8 52 61.5
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 7.7e-08 60.8 52 61.5
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.0e-07 60.5 63 69.8
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.0e-07 60.5 57 75.4
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.3e-07 60.1 67 67.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.7e-07 59.7 72 61.1
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.7e-07 59.7 66 65.2
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.7e-07 59.7 61 72.1
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.9e-07 58.9 68 60.3
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.9e-07 58.9 65 64.6
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 3.8e-07 58.5 57 73.7
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.8e-07 58.5 57 73.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 3.8e-07 58.5 57 73.7
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 3.8e-07 58.5 57 73.7
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 5.0e-07 58.2 57 71.9
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 6.6e-07 57.8 57 73.7
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 6.6e-07 57.8 48 60.4
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 1.1e-06 57.0 62 74.2
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.1e-06 57.0 65 64.6
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.1e-06 57.0 68 57.4
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.1e-06 57.0 65 66.2
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.1e-06 57.0 55 72.7
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 1.5e-06 56.6 58 55.2
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 1.9e-06 56.2 53 54.7
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.9e-06 56.2 62 67.7
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 1.9e-06 56.2 70 65.7
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.5e-06 55.8 57 70.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.5e-06 55.8 57 70.2
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 2.5e-06 55.8 57 70.2
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.5e-06 55.8 57 70.2
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 5.5e-06 54.7 69 68.1
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 5.5e-06 54.7 59 59.3
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 7.2e-06 54.3 57 73.7
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 7.2e-06 54.3 59 55.9
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.2e-06 54.3 59 55.9
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 7.2e-06 54.3 53 58.5
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 9.5e-06 53.9 58 51.7
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 9.5e-06 53.9 58 51.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 9.5e-06 53.9 59 54.2
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 9.5e-06 53.9 58 50.0


User provided reference genes

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