Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 0.0e+00 1162.5 594 100.0
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 0.0e+00 1147.5 594 98.8
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 0.0e+00 1142.5 594 97.8
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.1e-282 975.3 592 85.5
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.3e-268 929.5 594 81.8
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 8.8e-257 890.2 595 79.3
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 1.2e-218 763.5 607 67.5
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 3.6e-210 735.3 615 63.9
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 8.1e-210 734.2 615 65.5
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 6.4e-207 724.5 611 64.6
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.2e-202 710.3 617 63.2
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.6e-202 708.8 602 64.6
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.8e-201 706.4 614 62.7
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 7.6e-200 701.0 642 60.9
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.1e-196 688.3 610 61.6
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.1e-195 687.2 606 62.0
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.9e-195 686.4 606 62.2
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.5e-195 686.0 612 62.1
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.4e-193 680.2 614 60.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.1e-193 679.1 604 61.3
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.0e-192 676.4 602 62.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.4e-192 675.6 603 61.9
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.3e-191 673.7 599 61.1
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.7e-188 663.3 613 61.2
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 3.9e-188 662.1 604 60.4
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 8.7e-188 661.0 608 61.8
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.9e-187 659.8 614 60.4
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.3e-186 657.1 612 60.9
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-186 657.1 565 63.5
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 8.1e-186 654.4 605 61.2
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 4.0e-185 652.1 681 55.9
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.6e-184 649.4 617 58.3
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 2.6e-184 649.4 621 57.2
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.8e-180 636.7 606 57.6
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 1.8e-180 636.7 607 58.5
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 1.8e-180 636.7 574 61.0
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.5e-179 633.6 703 51.4
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 4.8e-178 628.6 630 57.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.8e-177 626.7 703 51.2
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 6.9e-177 624.8 617 56.7
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.5e-176 623.6 560 62.1
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.5e-176 622.1 575 60.0
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 7.6e-176 621.3 608 59.9
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 9.9e-176 620.9 610 58.4
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.4e-174 616.3 625 56.5
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 5.5e-174 615.1 504 66.5
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 7.1e-174 614.8 612 58.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.6e-173 613.6 611 58.1
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 2.1e-173 613.2 603 55.4
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 6.0e-173 611.7 631 55.5
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 7.9e-173 611.3 608 56.4
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 3.9e-172 609.0 610 58.0
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 5.1e-172 608.6 603 57.5
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 9.6e-171 604.4 605 56.5
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.3e-170 604.0 612 57.8
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 2.4e-169 599.7 613 57.9
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 4.0e-169 599.0 613 56.3
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 4.0e-169 599.0 610 55.1
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 4.0e-169 599.0 620 56.9
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 8.4e-167 591.3 620 54.0
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 5.5e-166 588.6 613 54.3
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 7.1e-166 588.2 629 56.3
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 8.7e-164 581.3 615 55.1
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 4.3e-163 578.9 615 55.0
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 3.1e-161 572.8 623 53.6
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.6e-160 569.7 471 64.1
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.6e-160 569.7 640 53.0
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.0e-159 567.8 624 53.8
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.4e-158 563.9 656 51.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 1.9e-158 563.5 609 53.4
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 6.1e-157 558.5 665 49.9
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 6.1e-157 558.5 665 49.9
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 8.7e-156 554.7 614 55.9
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 8.7e-156 554.7 614 55.9
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 8.7e-156 554.7 595 54.5
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 9.7e-155 551.2 633 52.6
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 2.8e-154 549.7 617 54.1
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 3.1e-153 546.2 617 53.8
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.6e-152 543.1 575 53.7
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.9e-151 539.7 635 52.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.5e-151 538.5 620 51.0
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 7.2e-150 535.0 604 52.0
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.0e-148 531.2 603 52.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.0e-148 529.6 604 51.8
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 4.4e-147 525.8 602 50.7
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 4.8e-146 522.3 620 50.8
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 9.7e-139 498.0 634 46.7
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 6.3e-138 495.4 568 53.2
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.2e-136 491.1 602 49.2
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 2.6e-131 473.4 604 48.7
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 4.1e-129 466.1 600 48.0
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 4.1e-129 466.1 612 47.1
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 5.9e-128 462.2 627 46.7
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 6.1e-125 452.2 608 48.5
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.0e-124 451.4 445 55.1
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 2.6e-123 446.8 409 60.4
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.7e-122 443.0 604 47.4
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.7e-119 434.1 599 47.2
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 6.5e-119 432.2 643 47.9
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.2e-107 394.8 563 44.6
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.2e-104 384.8 408 51.2
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.5e-102 377.9 354 57.3
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.6e-88 331.3 296 59.5
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.0e-87 327.0 541 42.0
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.4e-81 308.1 542 39.5
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 7.1e-81 305.8 234 73.1
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 6.0e-72 276.2 447 40.7
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.4e-54 216.1 273 42.9
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.8e-52 211.5 270 47.0
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.9e-46 191.4 274 48.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.6e-45 188.3 181 53.6
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 3.1e-44 184.1 673 28.4
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.2e-43 182.2 139 65.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-37 162.2 113 66.4
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 9.1e-36 156.0 166 51.8
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.0e-35 154.8 487 31.0
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.5e-35 153.7 197 47.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.8e-31 141.7 139 60.4
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.5e-30 138.7 190 46.8
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.5e-30 138.7 128 56.2
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 3.3e-30 137.5 584 25.3
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 3.3e-30 137.5 150 54.0
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.7e-29 134.0 103 64.1
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 2.6e-27 127.9 640 27.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.9e-26 124.4 131 51.9
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.1e-25 122.5 186 45.2
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 2.5e-25 121.3 489 28.0
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.6e-24 117.5 75 68.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.6e-22 111.3 97 57.7
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.3e-21 109.0 94 67.0
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.4e-15 89.0 163 46.0
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.3e-15 88.2 73 65.8
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 3.0e-15 87.8 89 53.9
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.2e-14 85.9 80 45.0
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 1.8e-12 78.6 69 52.2
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.9e-09 68.6 49 61.2
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 5.5e-09 67.0 155 39.4


User provided reference genes

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