Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 4580.8 2458 100.0
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 4505.3 2458 98.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 4381.2 2461 96.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 3780.7 2464 84.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 3775.7 2466 85.0
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 3765.3 2466 84.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 3462.2 2479 78.8
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 3417.9 2482 78.1
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 3410.5 2482 78.4
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 3310.0 2479 76.2
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2736.4 2482 66.6
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2570.0 2526 62.6
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2537.7 2507 61.7
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2504.9 2531 60.8
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2484.9 2505 61.1
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2414.0 2514 59.8
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2412.5 2542 59.9
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2411.3 2536 59.1
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2397.9 2495 59.8
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2331.6 2518 58.6
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2297.7 2510 58.7
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2294.6 2567 57.7
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2281.1 2504 57.8
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2272.7 2575 57.3
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2265.3 2470 58.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2264.6 2529 57.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2260.7 2572 57.0
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2258.4 2565 57.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2256.9 2507 56.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2231.1 2506 57.5
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2224.1 2493 57.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2177.1 2496 57.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2144.4 2501 56.4
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2130.1 2519 56.1
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2119.4 2553 54.2
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2107.0 2499 54.9
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2101.2 2532 56.0
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2064.3 2532 55.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2050.8 2533 53.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2033.8 2499 54.8
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2028.8 2542 53.5
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1988.4 2504 52.9
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1987.6 2503 53.7
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1983.4 2507 53.2
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1963.3 2525 52.5
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1960.3 2516 52.3
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1939.5 2500 53.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1932.1 2493 52.8
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1929.8 2529 52.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1929.5 2537 51.6
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1928.7 2552 52.0
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1926.4 2519 52.2
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1925.6 2199 56.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1903.3 2573 50.0
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1894.4 2554 51.3
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1887.1 2517 51.0
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1882.8 2493 51.9
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1876.7 2313 54.4
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1869.7 2514 51.1
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1862.8 2522 51.6
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1858.6 2505 51.7
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1849.7 2655 48.8
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1848.6 2543 51.6
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1844.3 2524 50.9
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1840.1 2027 58.6
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1810.4 2511 49.4
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1798.9 2514 49.8
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1786.9 2500 51.0
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1780.4 1869 59.4
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1765.0 2509 49.3
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1756.5 2502 50.4
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1753.8 2407 50.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1726.1 2510 50.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1721.1 2521 48.5
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1720.3 2508 48.9
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1703.3 2540 47.0
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1681.4 2448 48.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1649.0 2390 49.1
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1634.0 2519 48.2
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1627.5 2506 47.2
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1587.4 2529 47.7
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1570.1 2501 46.8
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1501.5 2511 46.4
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1498.0 2553 43.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1483.4 2493 45.1
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1458.4 2627 42.5
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1432.9 2618 42.9
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1412.9 2561 42.6
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1385.5 2497 44.3
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1369.8 2505 44.5
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1364.7 2535 43.7
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1362.1 2495 43.2
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1356.7 2494 43.6
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1344.7 2442 43.8
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1337.0 2453 43.8
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1295.4 2488 42.0
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1210.3 2421 40.6
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1201.4 2620 40.6
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1193.3 2404 41.7
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1156.0 1710 50.3
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1152.9 2521 39.7
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1114.0 1284 54.0
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1105.5 1748 45.8
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.7e-311 1073.5 1075 63.4
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-308 1064.7 962 62.7
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.0e-274 951.8 2435 38.7
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 3.5e-267 926.8 1031 59.6
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.3e-258 897.5 2435 38.2
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.3e-258 897.5 2435 38.2
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 8.6e-258 895.6 2526 36.4
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 2.5e-257 894.0 2427 37.7
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.6e-256 891.3 2430 37.7
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.2e-254 885.2 2473 37.8
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 3.3e-241 840.5 2751 34.9
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.3e-218 764.6 715 62.0
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.6e-206 724.5 948 55.0
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.9e-206 723.4 969 50.1
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.2e-194 683.7 2537 32.3
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.6e-182 645.6 569 64.1
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.3e-173 615.9 1825 33.6
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.6e-173 613.2 1951 35.9
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 5.4e-159 567.4 1804 34.5
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 8.7e-141 506.9 453 62.5
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 2.9e-136 491.9 1327 38.1
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-134 486.1 938 40.6
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.9e-133 481.5 510 55.7
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.0e-130 471.5 739 43.6
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.0e-117 430.3 674 47.0
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 9.4e-103 380.6 1202 32.1
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.6e-94 352.1 2931 27.1
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 5.7e-84 318.2 983 32.9
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 5.0e-80 305.1 299 58.2
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.0e-77 295.4 2830 27.7
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.8e-67 262.7 1033 34.0
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 9.2e-58 231.1 508 38.4
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.0e-57 229.9 2804 26.1
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 4.5e-57 228.8 259 56.8
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.1e-55 224.2 557 35.9
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 3.3e-55 222.6 259 56.0
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.8e-54 219.5 228 57.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.9e-51 209.5 2798 26.0
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.8e-46 193.0 555 33.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.8e-46 193.0 451 36.8
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.6e-41 177.2 2433 24.9
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 3.3e-39 169.5 318 38.7
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 5.4e-34 152.1 203 49.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 6.6e-32 145.2 157 56.1
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 8.4e-27 128.3 352 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.6e-25 124.0 2161 25.9
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 9.6e-23 114.8 326 33.4
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.2e-18 99.8 225 40.4
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 2.1e-14 87.0 73 69.9
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 4.8e-14 85.9 147 44.9
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.5e-12 80.9 109 48.6
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.4e-12 79.7 185 37.8
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 4.5e-12 79.3 74 59.5
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 4.5e-12 79.3 74 59.5
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 6.0e-09 68.9 60 53.3
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 6.0e-09 68.9 227 33.5
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 3.9e-08 66.2 84 44.0
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.3e-06 61.2 96 40.6


User provided reference genes

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