Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 0.0e+00 1288.5 660 100.0
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 0.0e+00 1275.0 656 99.5
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 0.0e+00 1247.3 661 97.3
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 1.1e-268 929.9 657 74.3
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.6e-267 926.0 661 73.5
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.1e-231 807.0 657 65.9
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 2.1e-174 616.7 692 50.4
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 1.9e-172 610.1 698 51.1
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 2.6e-169 599.7 702 49.4
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 1.0e-152 544.7 679 48.2
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 6.5e-152 542.0 683 47.6
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 2.5e-151 540.0 674 47.3
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 8.0e-150 535.0 682 46.2
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.0e-149 532.7 673 47.7
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 3.7e-147 526.2 689 45.3
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 8.2e-147 525.0 676 45.9
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 5.3e-146 522.3 674 47.0
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 2.7e-145 520.0 683 46.0
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 2.9e-144 516.5 713 44.5
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.5e-144 515.0 705 45.7
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.2e-143 512.7 663 47.5
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 8.0e-142 508.4 675 45.6
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.0e-141 506.1 683 44.5
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.8e-141 505.0 658 46.7
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 2.0e-140 503.8 693 45.3
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.3e-139 501.1 678 45.1
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.2e-135 486.1 599 47.2
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.0e-133 481.5 671 44.1
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 7.0e-130 468.8 670 41.9
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 2.3e-128 463.8 671 42.2
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 4.3e-127 459.5 665 43.3
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.2e-126 458.0 672 41.2
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 3.6e-126 456.4 681 41.1
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 4.7e-126 456.1 672 43.5
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 4.4e-124 449.5 673 40.6
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 2.2e-123 447.2 622 44.7
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 6.4e-123 445.7 669 41.7
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 4.1e-122 443.0 687 39.2
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 5.0e-120 436.0 672 39.9
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 4.3e-119 433.0 670 40.1
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.6e-118 431.0 655 41.7
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 4.7e-118 429.5 519 48.0
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 8.0e-118 428.7 659 43.6
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.3e-117 427.2 681 41.0
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.2e-115 420.6 664 39.9
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 8.3e-115 418.7 697 40.5
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 3.5e-113 413.3 675 39.9
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 1.3e-112 411.4 678 40.1
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 5.0e-112 409.5 566 44.0
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 6.6e-112 409.1 647 41.9
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.9e-111 407.5 655 41.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 2.5e-111 407.1 679 38.9
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 4.3e-111 406.4 693 39.5
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 9.5e-111 405.2 695 39.6
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.6e-110 404.4 675 40.1
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.6e-110 404.4 682 40.3
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 3.6e-110 403.3 685 38.8
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.1e-109 401.7 711 38.8
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.8e-109 401.0 670 40.4
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.8e-109 401.0 675 39.7
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 7.5e-108 395.6 685 39.7
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 6.4e-107 392.5 586 42.7
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 8.3e-107 392.1 669 39.3
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 2.4e-106 390.6 697 38.9
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.2e-105 388.3 637 40.0
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 6.0e-105 386.0 665 38.8
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 7.8e-105 385.6 644 40.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.1e-103 381.7 583 42.7
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 4.7e-102 376.3 634 39.7
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 6.2e-102 375.9 623 39.8
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 6.2e-102 375.9 679 37.3
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 8.1e-102 375.6 599 40.7
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 2.6e-100 370.5 651 39.3
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 9.9e-100 368.6 543 42.7
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.9e-98 364.4 663 39.4
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 2.4e-98 364.0 542 43.0
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 7.1e-98 362.5 497 44.9
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 2.3e-96 357.5 657 37.7
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 3.9e-96 356.7 704 36.8
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 5.8e-92 342.8 744 36.2
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.2e-91 340.9 666 36.6
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 1.7e-88 331.3 600 36.0
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.6e-86 324.7 667 34.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.0e-85 318.9 556 39.7
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 5.4e-82 309.7 656 33.8
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 7.1e-82 309.3 533 39.0
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 9.3e-82 308.9 705 34.5
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 4.6e-81 306.6 427 45.2
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.5e-79 300.8 432 44.4
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 4.0e-77 293.5 682 34.8
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 2.0e-76 291.2 406 42.9
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 3.0e-72 277.3 628 34.6
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.1e-69 268.9 705 31.3
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 4.0e-69 266.9 703 31.4
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 7.6e-68 262.7 361 43.2
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 7.9e-65 252.7 688 32.4
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 9.0e-61 239.2 384 40.4
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 2.1e-57 228.0 403 40.2
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 1.7e-54 218.4 315 45.1
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.1e-49 199.9 319 38.2
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-44 185.7 195 52.8
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.1e-42 179.1 374 34.2
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.3e-30 139.0 137 54.7
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 5.9e-28 130.2 185 42.7
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 5.7e-23 113.6 143 45.5
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.3e-22 110.2 222 33.8
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 5.0e-19 100.5 478 25.9
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.2e-17 95.9 93 54.8
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 3.6e-17 94.4 572 22.9
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.0e-16 90.9 76 60.5
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.0e-16 90.9 76 60.5
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.5e-15 89.0 375 30.4
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.0e-11 76.3 98 44.9
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 6.6e-11 73.6 428 26.2
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 8.9e-08 63.2 72 45.8
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 7.5e-07 60.1 175 32.0
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 1.3e-06 59.3 311 27.0
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.3e-06 59.3 30 86.7
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 1.7e-06 58.9 36 75.0
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.7e-06 58.9 57 54.4
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.9e-06 57.4 113 31.9


User provided reference genes

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