Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 2.9e-219 765.0 398 100.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 4.1e-218 761.1 398 99.5
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.5e-188 662.9 369 94.3
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 4.2e-178 628.2 403 82.1
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 3.0e-176 622.1 401 81.3
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 2.9e-147 525.8 331 79.8
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 4.7e-145 518.5 334 79.6
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 6.1e-145 518.1 403 70.7
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 2.3e-144 516.2 336 78.9
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.7e-142 510.0 348 74.7
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.7e-142 510.0 349 75.1
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.1e-141 507.3 391 68.3
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 3.1e-141 505.8 403 69.0
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 5.3e-141 505.0 357 73.9
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.3e-141 505.0 349 74.5
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 5.3e-141 505.0 397 67.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 5.3e-141 505.0 402 68.7
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 7.0e-141 504.6 325 78.8
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.2e-140 503.8 393 69.2
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 2.0e-140 503.1 325 79.1
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 2.6e-140 502.7 325 79.1
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 3.5e-140 502.3 329 77.5
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 4.5e-140 501.9 340 77.1
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 4.5e-140 501.9 340 76.8
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 4.5e-140 501.9 380 70.5
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.5e-140 501.9 382 69.9
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.9e-140 501.5 402 68.2
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 7.7e-140 501.1 361 73.4
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.3e-139 500.4 372 70.7
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.2e-139 499.6 413 66.1
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 2.9e-139 499.2 365 71.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.9e-139 499.2 332 78.0
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 2.9e-139 499.2 402 67.7
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 3.8e-139 498.8 397 67.3
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 5.0e-139 498.4 384 70.6
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 6.5e-139 498.0 358 74.0
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 6.5e-139 498.0 416 65.9
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 8.5e-139 497.7 413 65.9
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.1e-138 497.3 326 75.8
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.5e-138 496.1 398 67.8
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.5e-138 496.1 360 72.2
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 7.2e-138 494.6 359 69.6
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 9.4e-138 494.2 418 62.9
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 9.4e-138 494.2 333 74.5
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 1.2e-137 493.8 338 75.7
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 2.1e-137 493.0 290 86.2
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 2.1e-137 493.0 355 73.5
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 3.6e-137 492.3 355 72.4
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 6.1e-137 491.5 394 69.0
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.4e-136 490.3 325 77.2
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 2.3e-136 489.6 396 67.4
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 5.2e-136 488.4 332 74.1
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 5.2e-136 488.4 373 67.0
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 6.7e-136 488.0 347 70.6
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 8.8e-136 487.6 356 71.9
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.5e-135 486.9 376 67.6
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 2.0e-135 486.5 304 79.6
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.7e-134 483.4 387 67.4
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 8.2e-134 481.1 413 63.9
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.4e-133 480.3 390 65.1
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 9.1e-133 477.6 361 68.1
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 4.5e-132 475.3 343 71.7
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 5.9e-132 474.9 335 71.3
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.7e-131 473.4 290 81.0
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.5e-131 471.5 482 57.5
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 8.5e-131 471.1 319 76.2
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 1.9e-130 469.9 290 77.9
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 2.1e-129 466.5 389 67.1
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 2.1e-129 466.5 402 62.9
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 2.1e-129 466.5 402 64.4
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 6.1e-129 464.9 391 66.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.4e-128 463.8 353 70.0
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 6.8e-128 461.5 371 65.2
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 6.8e-128 461.5 330 71.2
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 7.5e-127 458.0 275 84.4
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 6.3e-126 454.9 326 72.1
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 8.3e-126 454.5 340 67.9
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.8e-125 453.4 342 69.0
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 3.1e-125 452.6 345 68.1
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 3.8e-123 445.7 275 80.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 4.2e-122 442.2 301 76.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 2.3e-120 436.4 347 66.9
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.1e-117 427.6 261 83.1
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 9.1e-117 424.5 503 50.9
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 9.1e-117 424.5 294 72.1
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.5e-114 417.2 350 65.1
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.1e-113 413.3 381 58.0
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.8e-112 410.2 505 50.9
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 2.7e-108 396.4 366 59.3
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 3.5e-108 396.0 344 63.4
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 2.5e-106 389.8 294 73.1
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 1.2e-105 387.5 326 61.7
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.1e-105 386.7 242 78.1
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.9e-102 375.6 355 57.7
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.1e-101 374.4 287 68.6
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.6e-100 370.5 348 58.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 3.5e-100 369.4 325 61.5
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 4.4e-95 352.4 404 50.0
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 1.0e-91 341.3 221 77.8
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 3.0e-91 339.7 315 62.2
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 1.6e-89 334.0 239 74.1
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.5e-87 327.4 252 68.3
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.9e-82 310.5 305 51.8
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 5.6e-82 308.9 380 48.4
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 2.6e-79 300.1 297 57.6
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.2e-78 297.0 327 52.9
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.9e-77 293.9 198 76.3
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 1.3e-70 271.2 157 82.8
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 5.6e-66 255.8 157 77.7
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.3e-62 244.6 154 75.3
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 3.3e-58 229.9 195 65.6
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 9.3e-53 211.8 197 60.9
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 2.3e-43 180.6 207 53.1
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 4.2e-29 133.3 136 56.6
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 2.3e-27 127.5 113 58.4
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 2.6e-26 124.0 106 61.3
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.3e-25 121.7 113 55.8
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.3e-22 111.7 119 54.6
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.5e-18 98.2 61 75.4
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 2.7e-15 87.4 256 27.7
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 4.5e-15 86.7 85 56.5
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 3.8e-14 83.6 154 44.8
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 5.2e-11 73.2 35 97.1
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 7.0e-08 62.8 63 57.1


User provided reference genes

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