Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 1.0e-76 290.0 149 100.0
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.2e-74 283.1 149 97.3
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 4.3e-43 178.3 136 72.1
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.9e-35 152.9 77 97.4
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 2.0e-32 142.9 135 62.2
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 3.5e-29 132.1 79 81.0
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 5.1e-28 128.3 143 57.3
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 2.8e-26 122.5 80 76.2
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.6e-26 122.1 150 52.7
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 5.2e-25 118.2 79 73.4
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 3.4e-24 115.5 79 73.4
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 7.6e-24 114.4 77 76.6
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 7.6e-24 114.4 77 74.0
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 8.4e-23 110.9 81 71.6
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 9.3e-22 107.5 79 68.4
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 2.1e-21 106.3 80 73.8
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 2.1e-21 106.3 81 69.1
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 2.1e-21 106.3 77 72.7
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 4.6e-21 105.1 80 72.5
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 4.6e-21 105.1 80 70.0
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 6.0e-21 104.8 83 69.9
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 7.8e-21 104.4 80 71.2
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 1.0e-20 104.0 77 67.5
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 1.0e-20 104.0 80 67.5
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.3e-20 103.6 77 71.4
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 1.3e-20 103.6 77 70.1
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 2.3e-20 102.8 76 75.0
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.0e-20 102.4 77 74.0
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 3.0e-20 102.4 76 75.0
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 3.0e-20 102.4 76 75.0
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 3.0e-20 102.4 82 64.6
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 3.0e-20 102.4 82 64.6
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 3.0e-20 102.4 80 70.0
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.0e-20 102.4 78 69.2
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 3.9e-20 102.1 82 70.7
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 5.1e-20 101.7 79 72.2
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 5.1e-20 101.7 79 72.2
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 5.1e-20 101.7 79 72.2
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 6.6e-20 101.3 83 68.7
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 8.7e-20 100.9 77 70.1
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 8.7e-20 100.9 77 67.5
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 1.9e-19 99.8 80 68.8
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 1.9e-19 99.8 81 72.8
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 2.5e-19 99.4 77 67.5
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 2.5e-19 99.4 80 63.8
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 4.3e-19 98.6 78 66.7
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 5.6e-19 98.2 76 72.4
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 5.6e-19 98.2 76 72.4
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 5.6e-19 98.2 78 67.9
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 5.6e-19 98.2 79 67.1
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 7.3e-19 97.8 78 66.7
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 7.3e-19 97.8 77 66.2
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 7.3e-19 97.8 77 63.6
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 9.6e-19 97.4 78 66.7
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 9.6e-19 97.4 84 65.5
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 9.6e-19 97.4 88 63.6
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 1.3e-18 97.1 77 66.2
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 2.1e-18 96.3 77 66.2
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 2.1e-18 96.3 81 69.1
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 2.8e-18 95.9 79 65.8
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 4.8e-18 95.1 78 67.9
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 4.8e-18 95.1 92 62.0
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 1.4e-17 93.6 139 43.9
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 1.8e-17 93.2 76 69.7
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 1.8e-17 93.2 85 62.4
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 1.8e-17 93.2 83 60.2
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 2.4e-17 92.8 84 61.9
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 2.4e-17 92.8 83 62.7
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 4.0e-17 92.0 78 64.1
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 4.0e-17 92.0 77 63.6
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 4.0e-17 92.0 77 64.9
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 5.3e-17 91.7 124 50.8
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.2e-16 90.5 54 83.3
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 2.0e-16 89.7 83 59.0
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 3.4e-16 89.0 84 63.1
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 5.8e-16 88.2 74 62.2
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 9.9e-16 87.4 69 63.8
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 9.9e-16 87.4 81 60.5
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.9e-15 85.9 77 61.0
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 3.8e-15 85.5 60 75.0
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 3.8e-15 85.5 83 59.0
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.8e-15 85.5 100 53.0
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 4.9e-15 85.1 65 66.2
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.1e-14 84.0 83 56.6
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 1.9e-14 83.2 83 56.6
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 1.9e-14 83.2 81 56.8
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 2.4e-14 82.8 83 55.4
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.2e-14 82.0 82 57.3
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 7.1e-14 81.3 55 72.7
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 7.1e-14 81.3 61 70.5
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 1.2e-13 80.5 54 74.1
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 1.2e-13 80.5 69 59.4
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.6e-13 80.1 83 55.4
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 2.1e-13 79.7 97 50.5
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 4.6e-13 78.6 62 66.1
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.0e-12 77.4 82 53.7
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 1.8e-12 76.6 51 66.7
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 6.7e-12 74.7 79 51.9
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 1.1e-11 73.9 66 57.6
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 5.6e-11 71.6 57 68.4
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 1.1e-09 67.4 43 65.1
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 3.1e-09 65.9 64 50.0
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 2.2e-07 59.7 100 42.0
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 1.4e-06 57.0 69 47.8
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 1.9e-06 56.6 48 56.2


User provided reference genes

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