Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 3.1e-43 177.9 83 100.0
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 6.9e-43 176.8 83 98.8
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 4.5e-42 174.1 83 97.6
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.3e-41 172.6 83 97.6
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 3.8e-41 171.0 83 94.0
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 6.5e-41 170.2 83 94.0
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 3.6e-39 164.5 83 91.6
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 4.6e-39 164.1 83 91.6
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.4e-38 162.5 83 94.0
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.3e-38 161.8 83 89.2
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.5e-37 158.3 73 100.0
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 9.7e-37 156.4 84 84.5
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 1.3e-36 156.0 83 84.3
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 2.2e-36 155.2 83 84.3
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 2.2e-36 155.2 83 85.5
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 3.7e-36 154.5 83 81.9
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 4.8e-36 154.1 83 84.3
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 6.3e-36 153.7 83 83.1
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.1e-35 152.9 83 79.5
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.4e-35 152.5 83 78.3
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.4e-35 152.5 83 78.3
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.8e-35 152.1 83 79.5
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.8e-35 152.1 83 81.9
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.8e-35 152.1 83 83.1
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 3.1e-35 151.4 83 77.1
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 3.1e-35 151.4 83 77.1
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 3.1e-35 151.4 79 79.7
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 5.3e-35 150.6 86 77.9
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 5.3e-35 150.6 83 80.7
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 6.9e-35 150.2 86 80.2
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 6.9e-35 150.2 84 83.3
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 9.1e-35 149.8 86 80.2
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 1.2e-34 149.4 86 76.7
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 1.5e-34 149.1 83 83.1
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 2.0e-34 148.7 83 78.3
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 2.0e-34 148.7 83 78.3
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.0e-34 148.7 83 81.9
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 2.6e-34 148.3 83 75.9
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 2.6e-34 148.3 86 76.7
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 2.6e-34 148.3 84 82.1
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.6e-34 148.3 83 83.1
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 3.4e-34 147.9 83 78.3
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 3.4e-34 147.9 83 81.9
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 5.9e-34 147.1 82 76.8
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 5.9e-34 147.1 83 78.3
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 1.0e-33 146.4 81 80.2
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 1.3e-33 146.0 85 77.6
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.3e-33 146.0 82 74.4
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.3e-33 146.0 83 75.9
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 1.3e-33 146.0 87 80.5
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.3e-33 146.0 86 77.9
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 1.7e-33 145.6 81 80.2
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 1.7e-33 145.6 82 78.0
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 75.9
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 1.7e-33 145.6 86 77.9
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 2.2e-33 145.2 84 83.3
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 2.2e-33 145.2 84 83.3
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 2.2e-33 145.2 86 76.7
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 2.2e-33 145.2 87 79.3
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.9e-33 144.8 83 80.7
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 2.9e-33 144.8 84 82.1
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 79.5
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 79.5
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 3.8e-33 144.4 83 77.1
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.8e-33 144.4 82 74.4
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 77.1
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 78.6
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 5.0e-33 144.1 82 78.0
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 5.0e-33 144.1 83 80.7
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 5.0e-33 144.1 87 77.0
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 5.0e-33 144.1 84 77.4
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 5.0e-33 144.1 83 75.9
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 6.5e-33 143.7 83 78.3
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 6.5e-33 143.7 87 74.7
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 6.5e-33 143.7 84 77.4
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 6.5e-33 143.7 83 81.9
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 6.5e-33 143.7 83 81.9
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 8.5e-33 143.3 82 78.0
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 8.5e-33 143.3 83 79.5
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 8.5e-33 143.3 85 76.5
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 8.5e-33 143.3 87 75.9
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 8.5e-33 143.3 87 75.9
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 1.1e-32 142.9 87 75.9
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 1.1e-32 142.9 86 75.6
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 79.5
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 79.5
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 75.9
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 79.5
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 1.4e-32 142.5 86 74.4
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 1.4e-32 142.5 83 80.7
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.9e-32 142.1 82 79.3
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 1.9e-32 142.1 85 75.3
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 1.9e-32 142.1 83 78.3
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.9e-32 142.1 83 78.3
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 2.5e-32 141.7 83 78.3
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.5e-32 141.7 84 81.0
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 3.2e-32 141.4 80 78.8
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 3.2e-32 141.4 81 77.8
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 5.5e-32 140.6 80 77.5
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 5.5e-32 140.6 80 77.5
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 5.5e-32 140.6 83 78.3
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 5.5e-32 140.6 87 74.7
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 5.5e-32 140.6 83 75.9
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 9.4e-32 139.8 86 75.6
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 1.2e-31 139.4 83 78.3
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 1.6e-31 139.0 80 75.0
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 2.7e-31 138.3 83 74.7
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 2.7e-31 138.3 80 78.8
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 2.7e-31 138.3 83 79.5
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 4.7e-31 137.5 83 73.5
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 4.7e-31 137.5 83 73.5
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 4.7e-31 137.5 80 77.5
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 6.1e-31 137.1 83 73.5
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 7.9e-31 136.7 80 73.8
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 7.9e-31 136.7 86 70.9
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.4e-30 136.0 84 72.6
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 2.3e-30 135.2 81 77.8
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 3.0e-30 134.8 87 72.4
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 5.1e-30 134.0 77 77.9
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 5.1e-30 134.0 85 75.3
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 8.8e-30 133.3 76 78.9
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 2.6e-29 131.7 82 70.7
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 5.7e-29 130.6 89 69.7
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 5.7e-29 130.6 69 82.6
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 5.7e-29 130.6 69 82.6
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 9.7e-29 129.8 79 74.7
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 1.3e-28 129.4 79 70.9
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.1e-27 126.3 76 76.3
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 4.1e-27 124.4 79 68.4
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 9.1e-27 123.2 83 68.7
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 7.7e-26 120.2 69 76.8
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 2.2e-25 118.6 58 89.7
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 2.5e-24 115.2 74 67.6
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 9.4e-24 113.2 54 88.9
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.0e-22 109.8 51 90.2
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 6.7e-22 107.1 60 76.7
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 3.3e-21 104.8 54 77.8
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 4.4e-21 104.4 61 73.8
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 1.8e-19 99.0 63 60.3
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 1.2e-15 86.3 59 59.3
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 2.1e-15 85.5 45 77.8


User provided reference genes

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