Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-116 423.3 218 100.0
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 9.2e-111 403.7 218 96.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.6e-107 392.9 217 94.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.6e-99 366.3 217 89.4
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.6e-83 313.2 169 95.3
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.1e-82 310.5 169 94.1
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-82 310.5 169 94.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-79 300.1 171 91.2
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.2e-75 287.0 169 87.0
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.5e-73 280.0 169 85.2
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 9.9e-73 277.3 169 84.6
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 6.4e-72 274.6 169 85.2
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 6.4e-72 274.6 169 83.4
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 8.7e-69 264.2 168 78.0
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 3.4e-65 252.3 164 77.4
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-64 250.4 169 75.1
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.9e-64 249.2 163 74.8
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.1e-63 247.3 163 75.5
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.4e-63 246.1 163 76.1
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.2e-63 245.7 166 74.1
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 4.2e-63 245.4 164 75.6
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 9.3e-63 244.2 169 70.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-62 243.4 164 74.4
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-62 243.4 164 74.4
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.6e-62 243.4 171 72.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.1e-62 243.0 165 71.5
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.1e-62 243.0 169 70.4
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 7.9e-62 241.1 169 69.8
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-61 239.6 164 73.8
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.0e-61 239.2 169 69.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 3.0e-61 239.2 168 69.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 3.9e-61 238.8 170 74.7
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 3.9e-61 238.8 171 70.8
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 3.9e-61 238.8 169 70.4
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 8.7e-61 237.7 165 72.1
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 8.7e-61 237.7 165 72.1
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.1e-60 237.3 166 69.9
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-60 237.3 166 69.9
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.5e-60 236.1 160 71.9
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.3e-60 235.7 164 71.3
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 4.3e-60 235.3 170 71.8
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 7.4e-60 234.6 161 71.4
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.6e-60 234.2 130 90.8
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.3e-59 233.8 167 70.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.3e-59 233.8 167 70.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-59 233.8 164 70.7
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.6e-59 233.4 164 70.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.1e-59 233.0 170 72.4
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 2.8e-59 232.6 172 69.8
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-58 230.7 167 70.7
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.1e-58 230.7 162 69.8
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.4e-58 230.3 166 71.1
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.8e-58 229.9 170 71.2
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.4e-58 229.6 172 65.7
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 5.3e-58 228.4 173 66.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-57 227.3 169 68.6
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.2e-57 227.3 169 69.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.2e-57 227.3 160 70.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.5e-57 226.9 187 67.9
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.5e-57 226.9 160 69.4
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.0e-57 226.5 178 66.9
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.6e-57 226.1 175 67.4
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.6e-57 226.1 171 70.2
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.4e-57 225.7 164 68.3
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 5.8e-57 224.9 166 66.9
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 7.6e-57 224.6 166 68.1
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 7.6e-57 224.6 165 66.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.9e-57 224.2 169 68.0
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 9.9e-57 224.2 166 65.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.3e-56 223.8 174 65.5
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.7e-56 223.4 169 66.3
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.2e-56 223.0 166 69.3
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.8e-56 222.2 166 67.5
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.9e-56 221.9 169 69.2
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.4e-56 221.1 166 68.7
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 8.4e-56 221.1 169 68.0
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 8.4e-56 221.1 166 64.5
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.1e-55 220.7 173 64.2
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.1e-55 220.7 167 64.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.1e-55 220.7 180 62.2
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-55 220.7 161 67.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.4e-55 219.5 169 66.9
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.2e-55 219.2 168 67.3
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.2e-55 219.2 166 66.3
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.2e-55 219.2 169 66.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 4.2e-55 218.8 165 68.5
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 4.2e-55 218.8 166 68.1
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 5.5e-55 218.4 174 64.4
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 7.1e-55 218.0 166 67.5
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 9.3e-55 217.6 178 66.3
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.3e-55 217.6 167 65.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.6e-54 216.9 166 68.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.1e-54 216.5 176 62.5
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 3.5e-54 215.7 165 67.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.5e-54 215.7 179 64.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 4.6e-54 215.3 178 64.6
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 6.0e-54 214.9 165 68.5
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 7.9e-54 214.5 166 67.5
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-53 214.2 178 64.0
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.0e-53 214.2 169 66.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.8e-53 213.4 166 66.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-53 213.4 171 67.3
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.8e-53 213.4 165 67.3
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.3e-53 213.0 203 57.6
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.0e-53 212.6 178 63.5
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.0e-53 212.6 183 62.8
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 3.9e-53 212.2 201 58.2
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 5.1e-53 211.8 162 67.3
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 5.1e-53 211.8 165 66.7
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 6.7e-53 211.5 165 66.7
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 8.7e-53 211.1 160 65.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.5e-52 210.3 169 60.9
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.9e-52 209.9 159 64.8
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.5e-52 209.5 166 66.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 2.5e-52 209.5 166 68.1
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 2.5e-52 209.5 179 63.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.5e-52 209.5 159 64.8
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.3e-52 209.1 179 63.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 7.4e-52 208.0 165 66.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.3e-51 207.2 172 64.5
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.6e-51 206.8 169 62.1
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.8e-51 206.1 176 62.5
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.8e-51 206.1 170 61.8
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 4.8e-51 205.3 160 63.1
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.1e-50 202.6 178 61.2
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.2e-49 200.7 161 64.6
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.0e-49 199.9 159 67.3
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 3.8e-48 195.7 166 58.4
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 4.9e-48 195.3 194 51.5
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.1e-47 194.1 147 64.6
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.5e-47 193.0 173 56.6
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.7e-46 189.5 163 61.3
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.5e-46 189.1 175 54.9
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.3e-45 186.4 166 62.0
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.1e-45 185.3 181 55.2
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.3e-43 180.6 120 75.8
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.3e-43 178.3 130 69.2
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 7.2e-39 164.9 142 56.3
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 9.3e-39 164.5 123 64.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.7e-37 158.3 110 71.8
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.1e-36 157.5 111 72.1
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 9.7e-36 154.5 110 72.7
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.8e-34 150.2 111 66.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.6e-33 146.4 108 65.7
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 5.0e-32 142.1 160 46.9
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 4.2e-31 139.0 112 66.1
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 4.6e-30 135.6 109 69.7
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.0e-29 132.9 161 45.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.6e-28 129.8 121 55.4
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.3e-28 129.4 158 44.3
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.3e-27 127.5 130 46.9
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.2e-27 126.7 110 67.3
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.8e-27 126.3 160 43.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.9e-26 121.7 88 69.3
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.9e-23 113.6 127 44.9
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.2e-23 112.8 163 38.0
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.2e-23 111.7 124 45.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.6e-22 109.4 164 39.0
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.8e-21 107.1 110 49.1
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 3.9e-21 105.9 157 38.2
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-19 99.8 71 74.6
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.7e-19 99.4 108 52.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.9e-16 89.7 161 34.2
Gohir.D10G173800 Gossypium hirsutum HOM05D021941 ORTHO05D036302 6.5e-16 88.6 43 97.7
Gohir.D09G052800 Gossypium hirsutum HOM05D021941 ORTHO05D036302 1.5e-12 77.4 37 100.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.7e-11 72.8 64 65.6
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.0e-08 62.4 30 96.7
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.5e-07 60.8 98 40.8


User provided reference genes

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