Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.0e-148 530.0 258 100.0
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.0e-113 411.8 248 87.1
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.2e-112 410.2 248 86.7
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 8.6e-108 394.0 262 80.2
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.2e-103 379.4 262 76.7
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 1.1e-102 377.1 226 83.6
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 2.4e-102 375.9 248 80.2
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 3.2e-102 375.6 248 79.0
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 4.1e-102 375.2 248 78.2
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 5.4e-102 374.8 248 79.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 7.0e-102 374.4 226 84.5
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.2e-101 373.6 248 78.6
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.7e-101 372.5 249 78.3
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 6.0e-101 371.3 249 78.3
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 6.0e-101 371.3 249 78.3
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 6.0e-101 371.3 248 77.8
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.3e-100 370.2 219 84.0
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 2.3e-100 369.4 235 77.9
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 3.0e-100 369.0 219 84.0
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 5.0e-100 368.2 219 83.6
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 5.0e-100 368.2 235 78.7
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 6.6e-100 367.9 262 74.4
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 6.6e-100 367.9 219 84.0
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 8.6e-100 367.5 248 77.8
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.6e-100 367.5 219 83.6
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.1e-99 367.1 219 82.6
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.5e-99 366.7 219 82.6
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.5e-99 366.7 250 78.0
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 2.5e-99 365.9 248 76.6
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.3e-99 365.5 248 76.6
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 3.3e-99 365.5 219 82.2
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 4.3e-99 365.2 221 83.3
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 4.3e-99 365.2 221 83.3
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 4.3e-99 365.2 220 83.2
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 4.3e-99 365.2 220 83.2
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 5.6e-99 364.8 248 77.4
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 5.6e-99 364.8 248 77.4
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 5.6e-99 364.8 262 74.0
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 9.5e-99 364.0 219 80.8
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.2e-98 363.6 253 76.3
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 2.1e-98 362.8 220 81.8
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.1e-98 362.8 219 80.8
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 2.8e-98 362.5 220 81.4
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.6e-98 362.1 220 84.5
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 4.7e-98 361.7 248 76.2
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 6.2e-98 361.3 220 81.4
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 8.1e-98 360.9 267 72.3
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.1e-97 360.5 219 82.2
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 1.1e-97 360.5 266 72.6
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.4e-97 360.1 220 81.4
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 1.8e-97 359.8 221 81.0
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 1.8e-97 359.8 219 81.3
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 3.1e-97 359.0 249 74.3
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.2e-97 358.2 219 79.9
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 6.8e-97 357.8 220 80.9
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.5e-96 356.7 248 75.0
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 2.6e-96 355.9 248 73.0
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 2.6e-96 355.9 251 75.3
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 3.4e-96 355.5 248 72.6
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 5.8e-96 354.8 219 78.1
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 5.8e-96 354.8 219 78.1
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 5.8e-96 354.8 231 78.4
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 5.8e-96 354.8 241 76.8
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 7.5e-96 354.4 220 80.0
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 9.8e-96 354.0 248 72.6
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 1.3e-95 353.6 248 72.2
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 1.3e-95 353.6 219 79.0
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 1.7e-95 353.2 248 72.2
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 2.2e-95 352.8 262 69.8
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 2.2e-95 352.8 251 74.5
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.2e-95 352.8 262 70.6
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 2.9e-95 352.4 247 72.5
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 2.9e-95 352.4 253 74.3
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 2.9e-95 352.4 219 78.5
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 6.4e-95 351.3 248 72.2
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 8.3e-95 350.9 220 79.1
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.4e-94 350.1 252 73.4
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 1.6e-93 346.7 219 77.6
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 2.1e-93 346.3 254 73.2
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 5.1e-92 341.7 242 70.7
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 3.3e-91 339.0 250 70.8
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 5.6e-91 338.2 248 70.6
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 5.6e-91 338.2 265 67.5
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 7.3e-91 337.8 251 72.5
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 2.1e-90 336.3 251 72.1
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.2e-90 334.7 237 76.4
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.1e-89 334.0 258 68.2
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 4.0e-89 332.0 219 75.3
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 8.9e-89 330.9 248 69.8
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.1e-86 323.9 221 73.3
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.1e-86 323.9 218 76.6
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.1e-85 319.7 248 68.5
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 6.0e-85 318.2 221 72.4
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 3.9e-84 315.5 248 70.2
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 6.2e-82 308.1 220 69.1
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.5e-80 303.5 220 71.8
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 3.4e-80 302.4 219 72.6
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 7.6e-80 301.2 220 68.2
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 7.6e-80 301.2 251 68.1
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 1.3e-79 300.4 220 70.0
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 1.1e-78 297.4 214 72.0
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 1.4e-78 297.0 448 44.0
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.4e-78 296.2 220 71.8
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 4.2e-78 295.4 227 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 1.0e-76 290.8 219 66.2
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 2.5e-75 286.2 250 63.6
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 8.1e-74 281.2 220 65.5
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.3e-71 273.9 222 64.9
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 2.9e-71 272.7 210 66.7
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.9e-71 272.7 245 60.4
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 5.4e-70 268.5 148 87.2
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.3e-68 263.8 219 63.5
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 3.0e-68 262.7 262 58.4
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 2.5e-67 259.6 213 62.9
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 2.1e-66 256.5 219 64.4
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 9.0e-65 251.1 182 72.0
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 4.9e-63 245.4 258 52.7
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 2.4e-62 243.0 168 73.8
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.1e-61 240.0 209 61.7
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 8.7e-60 234.6 208 60.6
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 8.7e-60 234.6 157 75.8
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 7.1e-54 214.9 214 48.6
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 7.1e-54 214.9 306 48.7
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.2e-53 214.2 115 88.7
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 3.5e-53 212.6 158 67.7
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.3e-52 210.7 138 74.6
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.3e-52 210.7 219 57.1
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 1.8e-52 210.3 115 85.2
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 3.9e-52 209.1 234 47.0
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 5.7e-51 205.3 201 51.2
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 3.9e-44 182.6 127 72.4
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 7.7e-40 168.3 100 83.0
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 8.8e-36 154.8 103 74.8
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 1.1e-33 147.9 190 48.4
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 6.5e-31 138.7 105 67.6
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 2.6e-27 126.7 71 83.1
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.2e-26 123.6 223 42.2
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 2.0e-24 117.1 92 69.6
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-19 98.2 67 70.1
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 4.2e-14 82.8 52 75.0


User provided reference genes

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