Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.1e-94 349.0 174 100.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-89 331.6 177 96.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 8.4e-75 283.9 173 82.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.2e-74 281.6 173 80.9
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-73 278.5 173 79.2
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.9e-72 275.0 173 78.0
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.4e-69 265.8 173 75.1
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.1e-69 265.4 173 75.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.0e-68 262.7 173 74.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.0e-68 262.7 173 72.3
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.6e-68 262.3 173 74.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.9e-68 261.2 174 73.6
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 7.6e-68 260.8 173 74.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 7.6e-68 260.8 173 74.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.3e-67 260.0 174 75.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.7e-67 259.6 173 73.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.7e-67 259.6 173 73.4
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 3.8e-67 258.5 173 73.4
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.8e-67 258.5 173 74.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 3.8e-67 258.5 173 74.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.1e-66 256.9 173 74.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-66 256.9 173 72.8
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-66 256.9 173 72.8
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-66 256.9 171 73.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-66 256.5 173 74.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.5e-66 255.8 173 72.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.5e-66 255.8 173 72.3
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.2e-66 255.4 172 73.3
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.2e-66 255.0 173 72.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.3e-66 253.8 174 72.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.2e-65 253.4 172 72.7
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.6e-65 253.1 173 69.4
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.1e-65 251.1 172 70.3
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 6.1e-65 251.1 173 71.1
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.1e-65 251.1 174 70.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 7.9e-65 250.8 176 69.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.3e-64 250.0 173 71.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.3e-64 250.0 173 69.9
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.8e-64 249.6 175 72.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.3e-64 249.2 173 71.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.0e-64 248.8 174 70.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.0e-64 248.8 175 72.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 3.9e-64 248.4 174 70.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 5.1e-64 248.1 169 73.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.7e-64 247.7 172 68.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 6.7e-64 247.7 171 70.8
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.7e-64 247.3 174 69.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 8.7e-64 247.3 174 69.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.5e-63 246.5 173 73.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.9e-63 246.1 172 69.2
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.5e-63 245.7 173 69.4
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.3e-63 245.4 172 68.0
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 4.3e-63 245.0 171 70.2
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 4.3e-63 245.0 172 68.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.3e-63 245.0 163 73.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.4e-63 244.2 173 67.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-62 243.4 172 68.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.3e-62 243.4 172 67.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-62 243.4 173 65.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.7e-62 243.0 172 66.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.7e-62 243.0 172 66.9
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.2e-62 242.7 174 65.5
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.8e-62 242.3 171 70.2
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 6.3e-62 241.1 172 66.9
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 8.2e-62 240.7 172 66.3
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 8.2e-62 240.7 172 66.3
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.8e-61 239.6 173 67.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.4e-61 239.2 173 65.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.4e-61 239.2 173 65.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.1e-61 238.8 170 67.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.1e-61 238.8 170 69.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.1e-61 238.8 170 70.6
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.1e-61 238.8 170 70.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 4.1e-61 238.4 180 66.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.1e-61 238.4 171 69.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.0e-60 236.1 174 67.8
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.6e-60 235.7 173 64.7
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.6e-60 235.7 170 68.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-60 235.3 174 67.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.4e-60 235.3 168 67.9
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.4e-60 235.3 173 67.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 5.9e-60 234.6 173 63.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 7.7e-60 234.2 171 66.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.0e-59 233.8 170 65.9
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.0e-59 233.8 168 68.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-59 233.4 173 64.2
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.2e-59 232.6 175 68.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.2e-59 232.6 173 64.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.2e-59 232.6 173 64.2
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 5.0e-59 231.5 175 66.3
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.1e-58 230.3 173 67.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.4e-58 229.9 173 63.0
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.4e-58 229.9 164 66.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.4e-58 229.9 175 65.7
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.9e-58 229.6 165 68.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.5e-58 229.2 170 67.6
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.5e-58 229.2 156 71.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.5e-58 229.2 173 63.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.5e-58 229.2 169 65.7
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.2e-58 228.8 171 63.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 5.5e-58 228.0 175 68.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.2e-58 227.6 173 63.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.2e-57 226.9 171 66.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.6e-57 226.5 170 64.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.1e-57 226.1 170 62.9
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 7.9e-57 224.2 173 62.4
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.3e-56 222.6 173 59.5
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 3.0e-56 222.2 172 64.5
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 6.7e-56 221.1 170 62.4
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.1e-55 220.3 170 65.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.5e-55 219.9 165 66.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 4.4e-55 218.4 168 64.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 7.4e-55 217.6 168 64.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 7.4e-55 217.6 168 64.3
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 2.2e-54 216.1 168 64.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.8e-54 215.7 170 61.8
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.8e-54 214.9 165 64.2
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 6.3e-54 214.5 162 65.4
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.1e-53 213.8 165 64.2
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.4e-53 213.4 170 59.4
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.1e-53 211.8 173 60.7
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 9.1e-53 210.7 160 65.0
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 5.9e-52 208.0 167 62.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.7e-52 207.6 163 62.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.3e-51 206.8 172 59.3
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.3e-51 206.8 169 64.5
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-51 205.7 168 60.1
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.9e-50 203.0 168 59.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.5e-50 201.4 133 71.4
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 5.5e-50 201.4 132 73.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.2e-49 200.3 173 59.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.2e-48 194.9 176 59.1
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.7e-47 191.4 159 61.6
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 9.7e-47 190.7 168 58.9
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.7e-47 190.7 168 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.2e-46 189.5 160 58.8
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.7e-46 188.7 168 58.3
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.2e-46 187.6 168 57.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.3e-45 184.9 166 56.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.6e-44 183.3 160 56.9
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.6e-44 183.3 159 55.3
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.5e-44 182.2 173 53.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.9e-44 181.4 164 54.3
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.8e-43 178.7 182 53.3
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.1e-42 177.2 161 58.4
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-42 177.2 171 54.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.5e-42 176.0 160 56.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.2e-42 175.3 162 57.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.5e-42 174.9 135 66.7
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 9.4e-42 174.1 155 54.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.6e-41 173.3 169 53.3
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.7e-41 172.6 128 68.0
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.0e-41 171.0 134 61.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 3.0e-40 169.1 164 56.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.0e-40 169.1 124 68.5
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.7e-40 167.9 169 53.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.3e-39 165.6 142 57.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.4e-39 165.2 165 53.9
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.7e-38 163.3 128 63.3
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-38 162.9 169 52.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.3e-38 161.4 125 62.4
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.3e-35 153.7 153 50.3
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.6e-31 139.4 150 45.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.4e-31 139.0 116 64.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.8e-29 133.3 96 65.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.6e-28 130.2 94 64.9
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.8e-27 125.6 88 69.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.6e-27 124.4 97 62.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.5e-26 123.6 93 67.7
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.8e-25 119.4 174 44.3
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.7e-19 100.1 73 63.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.4e-15 85.5 53 77.4
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.4e-13 78.6 79 50.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-12 77.0 51 70.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 4.3e-10 68.9 39 76.9
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.3e-10 68.2 36 83.3
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 4.7e-09 65.5 80 43.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.1e-08 64.3 175 29.7
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-08 63.9 180 27.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.8e-08 63.5 175 29.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.0e-07 60.1 106 36.8
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.7e-06 57.0 32 78.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 3.7e-06 55.8 41 63.4
PRCOL_00003087 Prasinoderma coloniale HOM05D003826 ORTHO05D004479 4.9e-06 55.5 162 28.4


User provided reference genes

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