Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 5.6e-264 913.7 446 100.0
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 5.8e-261 903.7 446 99.3
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.0e-258 895.2 446 98.2
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 2.6e-237 825.1 446 88.6
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 6.9e-214 747.3 442 80.1
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 8.4e-212 740.3 445 77.5
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.5e-210 734.9 446 78.5
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 4.6e-210 734.6 475 74.5
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.3e-209 733.0 446 77.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 1.8e-209 732.6 444 77.7
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.3e-209 732.3 445 77.1
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 5.1e-209 731.1 446 77.4
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 4.3e-208 728.0 446 77.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 5.7e-208 727.6 447 75.8
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 7.4e-208 727.2 446 76.5
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 4.8e-207 724.5 446 78.0
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.4e-206 723.0 446 77.4
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 6.9e-206 720.7 446 77.1
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.1e-203 713.4 442 76.2
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 1.4e-203 713.0 442 75.1
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.2e-203 711.8 442 75.8
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 4.2e-203 711.4 445 76.2
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 5.5e-203 711.1 446 77.1
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.2e-202 709.9 444 76.6
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 2.1e-202 709.1 446 75.1
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 4.6e-202 708.0 444 73.9
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 3.0e-201 705.3 446 75.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.0e-201 705.3 442 73.5
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 3.0e-201 705.3 450 74.2
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 3.9e-201 704.9 441 76.0
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 5.1e-201 704.5 446 74.2
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.5e-200 703.0 444 75.2
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 4.3e-200 701.4 446 76.0
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 4.3e-200 701.4 446 73.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 5.7e-200 701.0 446 73.8
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 7.4e-200 700.7 444 73.6
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-199 699.5 444 76.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.2e-199 699.1 446 73.5
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.7e-199 698.4 447 75.8
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 3.7e-199 698.4 444 74.8
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 2.4e-198 695.7 446 72.4
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 5.3e-198 694.5 446 72.4
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.2e-197 693.3 446 73.8
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.2e-197 693.3 440 75.5
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.2e-196 689.1 447 72.5
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.9e-196 688.7 446 73.1
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.4e-195 686.4 447 72.9
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 1.4e-193 679.9 466 68.7
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.8e-193 679.5 442 73.5
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 6.7e-193 677.6 448 73.2
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.5e-192 676.4 434 72.8
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.5e-192 676.4 446 72.6
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 5.7e-192 674.5 447 71.1
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 7.4e-192 674.1 441 71.2
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.2e-189 666.8 448 73.4
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 6.5e-188 661.0 446 70.0
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.5e-187 659.1 471 68.8
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 5.5e-187 657.9 448 69.9
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 5.5e-187 657.9 444 70.5
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.1e-186 656.0 438 72.1
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 3.6e-186 655.2 451 68.7
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 2.3e-185 652.5 443 70.4
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 6.7e-185 651.0 444 68.2
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 9.7e-184 647.1 423 73.0
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.7e-183 646.4 443 69.5
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.4e-182 643.3 439 71.1
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 5.3e-182 641.3 438 71.0
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.0e-181 639.4 406 72.7
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 3.8e-180 635.2 416 73.3
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 7.7e-173 610.9 411 70.3
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.2e-172 609.4 469 66.7
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.9e-171 606.3 448 68.5
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 2.1e-170 602.8 446 65.5
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 2.7e-170 602.4 423 69.0
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.4e-168 595.1 349 79.4
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 9.8e-168 594.0 362 76.2
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.3e-167 591.3 388 71.4
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 6.3e-167 591.3 436 64.0
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.1e-166 590.5 452 64.6
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 4.1e-166 588.6 656 49.7
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.1e-166 587.4 388 70.9
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 5.9e-165 584.7 384 72.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 4.3e-155 552.0 353 75.4
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 1.3e-151 540.4 446 62.8
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 3.2e-150 535.8 355 72.1
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 7.3e-147 524.6 446 60.3
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 5.4e-142 508.4 437 59.3
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.0e-140 504.2 438 55.7
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 5.6e-139 498.4 500 55.0
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.8e-137 493.4 435 57.5
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 2.0e-136 490.0 387 62.3
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 8.3e-135 484.6 446 56.1
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 5.4e-134 481.9 446 61.2
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 2.3e-132 476.5 381 65.1
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 5.1e-132 475.3 344 69.8
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 1.5e-131 473.8 441 55.3
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 4.3e-131 472.2 283 79.2
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.6e-130 470.3 348 62.1
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 1.4e-129 467.2 278 81.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 2.9e-127 459.5 283 77.7
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.6e-125 453.8 446 54.7
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.3e-123 446.0 362 58.6
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 7.3e-123 444.9 283 75.3
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 1.3e-122 444.1 281 74.4
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 5.6e-115 418.7 451 50.8
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 7.3e-115 418.3 442 52.5
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.4e-113 414.1 288 70.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 6.4e-111 405.2 449 46.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 6.2e-106 388.7 285 65.6
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.1e-102 377.9 408 50.2
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.1e-99 367.9 446 45.7
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.2e-95 353.6 211 76.8
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 3.8e-95 352.8 211 77.3
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.8e-95 352.8 423 47.8
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.0e-87 328.2 343 49.0
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.6e-72 276.9 172 76.2
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.6e-72 276.9 172 76.2
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.1e-70 271.6 163 77.3
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 8.0e-69 265.4 152 81.6
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 8.8e-60 235.3 188 58.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.4e-59 233.0 152 67.1
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 1.8e-49 201.1 126 71.4
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 2.4e-49 200.7 130 70.8
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.7e-47 194.5 127 69.3
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 4.2e-46 189.9 130 65.4
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 1.4e-44 184.9 131 67.9
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 5.7e-43 179.5 288 36.1
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.7e-42 177.9 95 87.4
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 8.3e-42 175.6 123 64.2
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 2.6e-35 154.1 105 71.4
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 7.5e-35 152.5 177 47.5
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.4e-33 146.4 107 69.2
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.9e-31 140.2 101 60.4
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.4e-28 131.7 83 72.3
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 4.4e-27 126.7 107 57.0
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.1e-16 91.3 67 68.7
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.7e-16 90.9 69 69.6
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 3.5e-16 90.5 63 73.0
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.0e-15 89.0 63 66.7
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.5e-14 84.3 45 80.0
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 4.7e-13 80.1 48 70.8
EL10Ac1g01043 Beta vulgaris HOM05D005203 ORTHO05D006383 9.9e-11 72.4 32 87.5


User provided reference genes

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